Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OH720_RS28585 Genome accession   NZ_CP110128
Coordinates   6347993..6348511 (-) Length   172 a.a.
NCBI ID   WP_008065729.1    Uniprot ID   J2X0C4
Organism   Pseudomonas sp. WJP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6342993..6353511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH720_RS28560 (OH720_28570) - 6343053..6344039 (+) 987 WP_272603735.1 lysylphosphatidylglycerol synthase domain-containing protein -
  OH720_RS28565 (OH720_28575) - 6344106..6344864 (-) 759 WP_180204419.1 alpha/beta fold hydrolase -
  OH720_RS28570 (OH720_28580) - 6344854..6345963 (-) 1110 WP_272603736.1 DUF3182 family protein -
  OH720_RS28575 (OH720_28585) - 6346265..6347257 (-) 993 WP_272603737.1 GlxA family transcriptional regulator -
  OH720_RS28580 (OH720_28590) - 6347360..6347911 (+) 552 WP_272603738.1 cysteine hydrolase family protein -
  OH720_RS28585 (OH720_28595) ssb 6347993..6348511 (-) 519 WP_008065729.1 single-stranded DNA-binding protein Machinery gene
  OH720_RS28590 (OH720_28600) - 6348521..6349918 (-) 1398 WP_272603739.1 MFS transporter -
  OH720_RS28595 (OH720_28605) uvrA 6350110..6352944 (+) 2835 WP_272603740.1 excinuclease ABC subunit UvrA -
  OH720_RS28600 (OH720_28610) bfr 6353011..6353475 (-) 465 WP_007970123.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19074.19 Da        Isoelectric Point: 5.9314

>NTDB_id=752545 OH720_RS28585 WP_008065729.1 6347993..6348511(-) (ssb) [Pseudomonas sp. WJP1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGQGGGNYQQSAPRQQAPRPQQSAPQQSRPAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=752545 OH720_RS28585 WP_008065729.1 6347993..6348511(-) (ssb) [Pseudomonas sp. WJP1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGTTACCTGCCGAATGGCAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAAGTCGAAAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTTGCAGAGATCGCAGGCGAGTACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGTCGTCCACAACAGGGTGACCAGCAAGGCCAGGGCGGCGGTAACTACCAGCAATCCGCTCCGC
GCCAGCAGGCTCCGCGTCCACAGCAGTCGGCACCGCAACAGTCGCGCCCGGCTCCTCAGCAGGCCGCTCCGCAGCCCGCT
CCGGACTTCGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2X0C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.983

100

0.593
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.517
  ssb Neisseria meningitidis MC58

47.727

100

0.488
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.488