Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D3P44_RS17685 Genome accession   NZ_CP110110
Coordinates   3711982..3712470 (-) Length   162 a.a.
NCBI ID   WP_041110253.1    Uniprot ID   -
Organism   Stutzerimonas balearica strain Z8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3706982..3717470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3P44_RS17660 (D3P44_017660) - 3707089..3708435 (-) 1347 WP_165562719.1 MotA/TolQ/ExbB proton channel family protein -
  D3P44_RS17665 (D3P44_017665) - 3708432..3709214 (-) 783 WP_165562718.1 DUF3450 domain-containing protein -
  D3P44_RS17670 (D3P44_017670) - 3709398..3710096 (+) 699 WP_212542953.1 OmpW/AlkL family protein -
  D3P44_RS17675 (D3P44_017675) - 3710166..3711095 (-) 930 WP_212542954.1 NAD-dependent epimerase/dehydratase family protein -
  D3P44_RS17680 (D3P44_017680) - 3711088..3711972 (-) 885 WP_061337277.1 sugar nucleotide-binding protein -
  D3P44_RS17685 (D3P44_017685) ssb 3711982..3712470 (-) 489 WP_041110253.1 single-stranded DNA-binding protein Machinery gene
  D3P44_RS17690 (D3P44_017690) - 3712639..3714006 (-) 1368 WP_212542955.1 MFS transporter -
  D3P44_RS17695 (D3P44_017695) uvrA 3714139..3716979 (+) 2841 WP_212542956.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18198.25 Da        Isoelectric Point: 5.9492

>NTDB_id=752428 D3P44_RS17685 WP_041110253.1 3711982..3712470(-) (ssb) [Stutzerimonas balearica strain Z8]
MARGVNKVILIGNVGGDPETRYLPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGSRGGSSDDAPRQPRPQREPQQAPRQQAQPQRQAAPQPAPDYDSFDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=752428 D3P44_RS17685 WP_041110253.1 3711982..3712470(-) (ssb) [Stutzerimonas balearica strain Z8]
ATGGCCAGAGGGGTGAATAAGGTCATCTTGATCGGCAACGTGGGCGGTGATCCCGAGACCCGCTATCTGCCCAATGGCAA
CGCGGTGACCAACATCACGCTTGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGCCAGCTCCAGGAACGCACCGAAT
GGCACCGTGTCGTGCTGTTCGGCAAAGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAG
GGCCGCCTGCAGACCCGTGAATGGGAAAAGGACGGCGTCAAGCGCTACACCACCGAAATAGTGGTGGACATGAACGGCAC
CATGCAGTTGCTCGGCAGCCGCGGCGGCTCCTCCGACGACGCGCCGCGCCAGCCGCGGCCGCAGCGTGAGCCCCAGCAGG
CTCCGCGCCAGCAGGCCCAGCCGCAGCGCCAGGCAGCTCCGCAGCCTGCGCCGGACTATGACAGCTTCGATGATGACATC
CCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.818

100

0.617
  ssb Neisseria gonorrhoeae MS11

45.556

100

0.506
  ssb Neisseria meningitidis MC58

45

100

0.5
  ssb Glaesserella parasuis strain SC1401

44.199

100

0.494