Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OKV75_RS17625 Genome accession   NZ_CP110109
Coordinates   3467612..3468133 (-) Length   173 a.a.
NCBI ID   WP_002094213.1    Uniprot ID   A0A9W7QTR5
Organism   Bacillus thuringiensis strain TG-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3462612..3473133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKV75_RS17605 rplI 3463822..3464268 (-) 447 WP_000864223.1 50S ribosomal protein L9 -
  OKV75_RS17610 - 3464265..3466238 (-) 1974 WP_001113780.1 DHH family phosphoesterase -
  OKV75_RS17615 - 3466317..3467252 (-) 936 WP_071713785.1 YybS family protein -
  OKV75_RS17620 rpsR 3467333..3467566 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  OKV75_RS17625 ssbA 3467612..3468133 (-) 522 WP_002094213.1 single-stranded DNA-binding protein Machinery gene
  OKV75_RS17630 rpsF 3468160..3468450 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  OKV75_RS17635 ychF 3468642..3469742 (-) 1101 WP_000524670.1 redox-regulated ATPase YchF -
  OKV75_RS17640 - 3469858..3470016 (-) 159 WP_153577919.1 DUF951 domain-containing protein -
  OKV75_RS17645 - 3470076..3470957 (-) 882 WP_000365111.1 mechanosensitive ion channel family protein -
  OKV75_RS17650 yyaC 3471217..3471813 (+) 597 WP_098675850.1 spore protease YyaC -
  OKV75_RS17655 spo0J 3471834..3472685 (-) 852 WP_001051823.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18779.55 Da        Isoelectric Point: 4.9222

>NTDB_id=752382 OKV75_RS17625 WP_002094213.1 3467612..3468133(-) (ssbA) [Bacillus thuringiensis strain TG-5]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=752382 OKV75_RS17625 WP_002094213.1 3467612..3468133(-) (ssbA) [Bacillus thuringiensis strain TG-5]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.813

100

0.387