Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCX17_RS10955 Genome accession   NZ_AP024732
Coordinates   2200090..2200560 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain 59621     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2195090..2205560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX17_RS10935 coaW 2195399..2196202 (+) 804 WP_000862727.1 type II pantothenate kinase -
  OCX17_RS10940 - 2196332..2197003 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  OCX17_RS10945 - 2197402..2198595 (-) 1194 WP_000183726.1 hypothetical protein -
  OCX17_RS10950 - 2198595..2199779 (-) 1185 WP_001291500.1 M20 family metallopeptidase -
  OCX17_RS10955 luxS 2200090..2200560 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  OCX17_RS10960 - 2200712..2201062 (-) 351 WP_001024030.1 hypothetical protein -
  OCX17_RS10965 - 2201076..2202377 (-) 1302 WP_001242310.1 pyrimidine-nucleoside phosphorylase -
  OCX17_RS10970 deoC 2202658..2203320 (-) 663 WP_117201042.1 deoxyribose-phosphate aldolase -
  OCX17_RS10975 deoD 2203635..2204345 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  OCX17_RS10980 - 2204466..2204909 (-) 444 WP_117201044.1 Dps family protein -
  OCX17_RS10985 - 2205109..2205522 (-) 414 WP_001123300.1 DUF393 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=75232 OCX17_RS10955 WP_000164421.1 2200090..2200560(+) (luxS) [Staphylococcus aureus strain 59621]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=75232 OCX17_RS10955 WP_000164421.1 2200090..2200560(+) (luxS) [Staphylococcus aureus strain 59621]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTTGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404

Multiple sequence alignment