Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SFSGTM_RS03145 Genome accession   NZ_AP021881
Coordinates   585698..586174 (+) Length   158 a.a.
NCBI ID   WP_162083890.1    Uniprot ID   A0A809S076
Organism   Sulfuriferula nivalis strain SGTM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 580698..591174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFSGTM_RS03135 (SFSGTM_06040) uvrA 581436..584243 (-) 2808 WP_162083889.1 excinuclease ABC subunit UvrA -
  SFSGTM_RS03140 (SFSGTM_06050) - 584308..585714 (+) 1407 WP_232526027.1 MFS transporter -
  SFSGTM_RS03145 (SFSGTM_06060) ssb 585698..586174 (+) 477 WP_162083890.1 single-stranded DNA-binding protein Machinery gene
  SFSGTM_RS17080 (SFSGTM_06070) - 586233..589496 (-) 3264 WP_162083891.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17310.28 Da        Isoelectric Point: 5.7989

>NTDB_id=75232 SFSGTM_RS03145 WP_162083890.1 585698..586174(+) (ssb) [Sulfuriferula nivalis strain SGTM]
MASVNKVILVGNIGKDPEIRYMPSGDAMVNLTLATTDNWKDKNGEKQERTEWHRVAIFGKLAEIAGQYLKKGSQVYFEGS
LKTRKWTNKEGHDQYTTEIIADKMQMLGGRSGGGSASMDDGGYTESRPAQRASAPAQNSAPAKSSSPSFEDMDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=75232 SFSGTM_RS03145 WP_162083890.1 585698..586174(+) (ssb) [Sulfuriferula nivalis strain SGTM]
ATGGCGTCAGTAAATAAAGTAATTTTAGTAGGCAACATCGGTAAAGATCCAGAAATTCGTTACATGCCTAGCGGCGATGC
TATGGTTAATTTGACGTTGGCGACGACTGATAACTGGAAAGATAAAAATGGTGAAAAACAGGAACGTACTGAGTGGCATC
GCGTTGCTATATTTGGCAAGCTAGCTGAAATTGCTGGGCAATATTTGAAAAAAGGTTCACAGGTTTATTTTGAAGGTAGC
CTGAAAACACGCAAGTGGACAAACAAAGAAGGTCACGATCAATATACTACTGAAATTATCGCTGACAAAATGCAGATGCT
GGGTGGGCGTAGTGGTGGCGGTTCGGCCAGTATGGATGACGGTGGCTATACAGAAAGCCGTCCAGCTCAACGCGCTAGTG
CACCTGCACAGAATAGTGCACCTGCTAAATCCAGCAGTCCTAGCTTTGAAGACATGGATGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809S076

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.282

100

0.563
  ssb Glaesserella parasuis strain SC1401

46.667

100

0.532
  ssb Neisseria gonorrhoeae MS11

46.243

100

0.506
  ssb Neisseria meningitidis MC58

45.665

100

0.5

Multiple sequence alignment