Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OKW88_RS14595 Genome accession   NZ_CP110105
Coordinates   2847652..2848170 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain CF03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2842652..2853170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS14565 (OKW88_14535) yyaJ 2843154..2844509 (+) 1356 WP_029318525.1 MFS transporter -
  OKW88_RS14570 (OKW88_14540) maa 2844543..2845097 (-) 555 WP_003226849.1 sugar O-acetyltransferase -
  OKW88_RS14575 (OKW88_14545) yyaH 2845115..2845495 (-) 381 WP_029726089.1 VOC family protein -
  OKW88_RS14580 (OKW88_14550) ccpB 2845551..2846486 (-) 936 WP_338382306.1 transcriptional regulator CcpB -
  OKW88_RS14585 (OKW88_14555) xth 2846545..2847303 (-) 759 WP_342006457.1 exodeoxyribonuclease III -
  OKW88_RS14590 (OKW88_14560) rpsR 2847369..2847608 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  OKW88_RS14595 (OKW88_14565) ssbA 2847652..2848170 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  OKW88_RS14600 (OKW88_14570) rpsF 2848211..2848498 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  OKW88_RS14605 (OKW88_14575) ychF 2848609..2849709 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  OKW88_RS14610 (OKW88_14580) yyaE 2849836..2851839 (-) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  OKW88_RS14615 (OKW88_14585) yyzM 2851890..2852096 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=752295 OKW88_RS14595 WP_003219228.1 2847652..2848170(-) (ssbA) [Bacillus subtilis strain CF03]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=752295 OKW88_RS14595 WP_003219228.1 2847652..2848170(-) (ssbA) [Bacillus subtilis strain CF03]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378