Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   QFX63_RS07865 Genome accession   NZ_CP123741
Coordinates   1645221..1645907 (-) Length   228 a.a.
NCBI ID   WP_000692886.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1640221..1650907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX63_RS07820 rpmA 1640935..1641219 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  QFX63_RS07825 - 1641231..1641551 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QFX63_RS07830 rplU 1641557..1641865 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  QFX63_RS07835 mreD 1642158..1642688 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  QFX63_RS07840 mreC 1642688..1643530 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  QFX63_RS07845 - 1643729..1643848 (-) 120 WP_000840602.1 hypothetical protein -
  QFX63_RS07850 - 1643922..1644395 (-) 474 WP_001236734.1 DUF4930 family protein -
  QFX63_RS07855 - 1644555..1644752 (+) 198 WP_072467374.1 hypothetical protein -
  QFX63_RS07860 - 1644869..1645153 (-) 285 WP_000171859.1 hypothetical protein -
  QFX63_RS07865 ysxA/radC 1645221..1645907 (-) 687 WP_000692886.1 DNA repair protein RadC Machinery gene
  QFX63_RS07870 - 1645904..1646611 (-) 708 WP_000261108.1 A24 family peptidase -
  QFX63_RS07875 - 1646887..1648158 (-) 1272 WP_001108346.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QFX63_RS07880 - 1648171..1650801 (-) 2631 WP_000425353.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25311.24 Da        Isoelectric Point: 6.7572

>NTDB_id=751832 QFX63_RS07865 WP_000692886.1 1645221..1645907(-) (ysxA/radC) [Staphylococcus aureus strain 2.2]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=751832 QFX63_RS07865 WP_000692886.1 1645221..1645907(-) (ysxA/radC) [Staphylococcus aureus strain 2.2]
TTGAAAATTAAAGAAATGGTAACTTCGGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTTGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377