Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFB78_RS21475 Genome accession   NZ_CP123593
Coordinates   4390808..4391344 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain DJH_183sputum     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4385808..4396344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB78_RS21445 soxR 4386760..4387224 (-) 465 WP_086524986.1 redox-sensitive transcriptional activator SoxR -
  QFB78_RS21450 soxS 4387310..4387633 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QFB78_RS21455 - 4387636..4388310 (-) 675 WP_024167285.1 EAL domain-containing protein -
  QFB78_RS21465 pdeC 4389123..4389998 (-) 876 Protein_4206 c-di-GMP phosphodiesterase PdeC -
  QFB78_RS21470 yjcB 4390428..4390709 (+) 282 WP_001295689.1 YjcB family protein -
  QFB78_RS21475 ssb 4390808..4391344 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QFB78_RS21480 uvrA 4391598..4394420 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QFB78_RS21485 yjbR 4394455..4394811 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QFB78_RS21490 yjbQ 4394815..4395231 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QFB78_RS21495 aphA 4395342..4396055 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=751335 QFB78_RS21475 WP_000168305.1 4390808..4391344(-) (ssb) [Escherichia coli strain DJH_183sputum]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=751335 QFB78_RS21475 WP_000168305.1 4390808..4391344(-) (ssb) [Escherichia coli strain DJH_183sputum]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489