Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MPB2EB_RS00825 Genome accession   NZ_AP021872
Coordinates   198789..199301 (-) Length   170 a.a.
NCBI ID   WP_185182003.1    Uniprot ID   -
Organism   Mycoavidus sp. B2-EB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 193789..204301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPB2EB_RS00795 (MPB2EB_0158) - 193929..194720 (-) 792 WP_185181997.1 IclR family transcriptional regulator -
  MPB2EB_RS00800 - 195056..195259 (+) 204 WP_185181998.1 hypothetical protein -
  MPB2EB_RS00805 (MPB2EB_0160) - 195326..196069 (-) 744 WP_185181999.1 F-box protein -
  MPB2EB_RS00810 (MPB2EB_0161) - 196265..197344 (-) 1080 WP_185182000.1 quinone-dependent dihydroorotate dehydrogenase -
  MPB2EB_RS00815 (MPB2EB_0162) - 197485..198030 (+) 546 WP_185182001.1 NUDIX hydrolase -
  MPB2EB_RS00820 (MPB2EB_0163) aat 198064..198792 (+) 729 WP_185182002.1 leucyl/phenylalanyl-tRNA--protein transferase -
  MPB2EB_RS00825 (MPB2EB_0164) ssb 198789..199301 (-) 513 WP_185182003.1 single-stranded DNA-binding protein Machinery gene
  MPB2EB_RS00830 (MPB2EB_0165) - 199302..200498 (-) 1197 WP_185182004.1 MFS transporter -
  MPB2EB_RS00835 (MPB2EB_0166) uvrA 200616..203525 (+) 2910 WP_185182005.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18603.65 Da        Isoelectric Point: 5.7989

>NTDB_id=75126 MPB2EB_RS00825 WP_185182003.1 198789..199301(-) (ssb) [Mycoavidus sp. B2-EB]
MASVNKVILVGNLGADPEIRSLPNGDPVANIRLATAERYKDKSTGEMKELTEWHRVVFFNRLAEVVRDYLKKGSSVYIEG
RIRTRKWQDQSGQDRYSTEIMGDQMQMLGSRSSGTAAMDQASYAPESTQAAPRASSYTPPANAAANRPSGTSHNAPASGG
FDEMDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=75126 MPB2EB_RS00825 WP_185182003.1 198789..199301(-) (ssb) [Mycoavidus sp. B2-EB]
ATGGCATCTGTTAATAAAGTCATCCTGGTTGGCAATCTTGGCGCTGATCCTGAAATACGTTCTCTGCCGAATGGCGACCC
CGTCGCGAATATCCGGCTGGCAACCGCAGAACGTTATAAAGATAAGTCCACGGGTGAAATGAAAGAACTCACCGAATGGC
ATCGCGTGGTTTTTTTCAATCGGCTCGCCGAAGTTGTCCGGGACTACCTCAAAAAAGGCTCTTCTGTTTACATTGAAGGA
CGCATTCGCACGCGGAAATGGCAAGACCAAAGTGGGCAAGATCGCTATTCAACTGAAATTATGGGCGATCAAATGCAAAT
GCTTGGCTCACGAAGCTCTGGCACAGCGGCCATGGATCAAGCAAGTTATGCACCCGAGTCCACTCAGGCGGCTCCGCGCG
CCAGCAGTTATACGCCTCCTGCAAACGCAGCGGCAAACCGCCCTAGCGGTACTTCTCATAACGCGCCGGCTAGCGGTGGA
TTTGATGAAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.381

100

0.547
  ssb Vibrio cholerae strain A1552

49.724

100

0.529
  ssb Neisseria gonorrhoeae MS11

43.575

100

0.459
  ssb Neisseria meningitidis MC58

42.458

100

0.447

Multiple sequence alignment