Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFB77_RS23245 Genome accession   NZ_CP123592
Coordinates   4391523..4392059 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain DJH_137urine     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4386523..4397059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFB77_RS23215 soxR 4387475..4387939 (-) 465 WP_086524986.1 redox-sensitive transcriptional activator SoxR -
  QFB77_RS23220 soxS 4388025..4388348 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QFB77_RS23225 - 4388351..4389025 (-) 675 WP_024167285.1 EAL domain-containing protein -
  QFB77_RS23235 pdeC 4389838..4390713 (-) 876 Protein_4209 c-di-GMP phosphodiesterase PdeC -
  QFB77_RS23240 yjcB 4391143..4391424 (+) 282 WP_001295689.1 YjcB family protein -
  QFB77_RS23245 ssb 4391523..4392059 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QFB77_RS23250 uvrA 4392313..4395135 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QFB77_RS23255 yjbR 4395170..4395526 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QFB77_RS23260 yjbQ 4395530..4395946 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QFB77_RS23265 aphA 4396057..4396770 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=751254 QFB77_RS23245 WP_000168305.1 4391523..4392059(-) (ssb) [Escherichia coli strain DJH_137urine]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=751254 QFB77_RS23245 WP_000168305.1 4391523..4392059(-) (ssb) [Escherichia coli strain DJH_137urine]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489