Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   OHM49_RS09775 Genome accession   NZ_CP109940
Coordinates   1962147..1962812 (-) Length   221 a.a.
NCBI ID   WP_043032914.1    Uniprot ID   A0A116QBH8
Organism   Streptococcus suis strain ID34572     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1957147..1967812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM49_RS09770 (OHM49_09770) hpf 1961528..1962070 (-) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  OHM49_RS09775 (OHM49_09775) comFC/cflB 1962147..1962812 (-) 666 WP_043032914.1 ComF family protein Machinery gene
  OHM49_RS09780 (OHM49_09780) comFA/cflA 1962805..1964097 (-) 1293 WP_024394375.1 DEAD/DEAH box helicase Machinery gene
  OHM49_RS09785 (OHM49_09785) - 1964154..1964786 (+) 633 WP_024394374.1 YigZ family protein -
  OHM49_RS09790 (OHM49_09790) cysK 1964876..1965802 (+) 927 WP_029178437.1 cysteine synthase A -
  OHM49_RS09795 (OHM49_09795) - 1965828..1966199 (-) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  OHM49_RS09800 (OHM49_09800) - 1966201..1967601 (-) 1401 WP_024394814.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25835.63 Da        Isoelectric Point: 8.2726

>NTDB_id=751004 OHM49_RS09775 WP_043032914.1 1962147..1962812(-) (comFC/cflB) [Streptococcus suis strain ID34572]
MSNCLLCDQTMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLNATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=751004 OHM49_RS09775 WP_043032914.1 1962147..1962812(-) (comFC/cflB) [Streptococcus suis strain ID34572]
ATGTCTAATTGTCTATTGTGTGATCAAACTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGGG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCTACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A116QBH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484