Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   OHM47_RS04015 Genome accession   NZ_CP109939
Coordinates   784587..785528 (+) Length   313 a.a.
NCBI ID   WP_024381435.1    Uniprot ID   A0A075SIN6
Organism   Streptococcus suis strain ID36054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 779587..790528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM47_RS04000 (OHM47_04000) - 780436..781473 (-) 1038 WP_024394674.1 3-deoxy-7-phosphoheptulonate synthase -
  OHM47_RS04005 (OHM47_04005) - 781773..782366 (-) 594 WP_024394673.1 DUF1361 domain-containing protein -
  OHM47_RS04010 (OHM47_04010) metG 782523..784526 (+) 2004 WP_044675531.1 methionine--tRNA ligase -
  OHM47_RS04015 (OHM47_04015) coiA 784587..785528 (+) 942 WP_024381435.1 competence protein CoiA Machinery gene
  OHM47_RS04020 (OHM47_04020) pepF 785759..787561 (+) 1803 WP_024381434.1 oligoendopeptidase F Regulator
  OHM47_RS04025 (OHM47_04025) - 787563..788003 (+) 441 WP_024394669.1 hypothetical protein -
  OHM47_RS04030 (OHM47_04030) - 788019..788567 (+) 549 WP_002938103.1 DUF6630 family protein -
  OHM47_RS04035 (OHM47_04035) - 788642..789361 (+) 720 WP_043032894.1 O-methyltransferase -
  OHM47_RS04040 (OHM47_04040) prsA 789422..790423 (+) 1002 WP_024394667.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36249.85 Da        Isoelectric Point: 8.0997

>NTDB_id=750933 OHM47_RS04015 WP_024381435.1 784587..785528(+) (coiA) [Streptococcus suis strain ID36054]
MLVALDEDGQVFNVLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGFQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTCPLDRALPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=750933 OHM47_RS04015 WP_024381435.1 784587..785528(+) (coiA) [Streptococcus suis strain ID36054]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTGCGGGACTGCC
ACTATTTTTCTGAGAATGAGTCAGCCCAGCATCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTTTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCATTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGCTTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
ACCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SIN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.564

99.681

0.524
  coiA Streptococcus pneumoniae TIGR4

50.641

99.681

0.505
  coiA Streptococcus pneumoniae Rx1

50.641

99.681

0.505
  coiA Streptococcus pneumoniae D39

50.641

99.681

0.505
  coiA Streptococcus pneumoniae R6

50.641

99.681

0.505
  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.428