Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   OHM52_RS09825 Genome accession   NZ_CP109937
Coordinates   1966864..1967529 (-) Length   221 a.a.
NCBI ID   WP_004194119.1    Uniprot ID   A0A140EWV9
Organism   Streptococcus suis strain TRG6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1961864..1972529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM52_RS09820 (OHM52_09820) hpf 1966245..1966787 (-) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  OHM52_RS09825 (OHM52_09825) comFC/cflB 1966864..1967529 (-) 666 WP_004194119.1 ComF family protein Machinery gene
  OHM52_RS09830 (OHM52_09830) comFA/cflA 1967522..1968814 (-) 1293 WP_024415030.1 DEAD/DEAH box helicase Machinery gene
  OHM52_RS09835 (OHM52_09835) - 1968871..1969503 (+) 633 WP_015646510.1 YigZ family protein -
  OHM52_RS09840 (OHM52_09840) cysK 1969593..1970519 (+) 927 WP_012774985.1 cysteine synthase A -
  OHM52_RS09845 (OHM52_09845) - 1970545..1970916 (-) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  OHM52_RS09850 (OHM52_09850) - 1970918..1972318 (-) 1401 WP_172001243.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25748.55 Da        Isoelectric Point: 8.2726

>NTDB_id=750896 OHM52_RS09825 WP_004194119.1 1966864..1967529(-) (comFC/cflB) [Streptococcus suis strain TRG6]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=750896 OHM52_RS09825 WP_004194119.1 1966864..1967529(-) (comFC/cflB) [Streptococcus suis strain TRG6]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGGATGCTACAAATATTCCTTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A140EWV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484