Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   OHM52_RS03335 Genome accession   NZ_CP109937
Coordinates   670863..671507 (-) Length   214 a.a.
NCBI ID   WP_024417715.1    Uniprot ID   -
Organism   Streptococcus suis strain TRG6     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 665863..676507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM52_RS03320 (OHM52_03320) - 666838..667365 (+) 528 WP_002942846.1 VanZ family protein -
  OHM52_RS03325 (OHM52_03325) nadE 668458..669282 (-) 825 WP_024413453.1 ammonia-dependent NAD(+) synthetase -
  OHM52_RS03330 (OHM52_03330) - 669295..670755 (-) 1461 WP_249547103.1 nicotinate phosphoribosyltransferase -
  OHM52_RS03335 (OHM52_03335) cclA/cilC 670863..671507 (-) 645 WP_024417715.1 A24 family peptidase Machinery gene
  OHM52_RS03340 (OHM52_03340) - 671629..672183 (+) 555 WP_024417714.1 class I SAM-dependent methyltransferase -
  OHM52_RS03345 (OHM52_03345) - 672199..672978 (-) 780 WP_024417713.1 ABC transporter ATP-binding protein -
  OHM52_RS03350 (OHM52_03350) - 673111..674448 (+) 1338 WP_004194632.1 hemolysin family protein -
  OHM52_RS03355 (OHM52_03355) pflA 674569..675360 (+) 792 WP_012027587.1 pyruvate formate-lyase-activating protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24209.37 Da        Isoelectric Point: 8.4760

>NTDB_id=750874 OHM52_RS03335 WP_024417715.1 670863..671507(-) (cclA/cilC) [Streptococcus suis strain TRG6]
MKTIILFFLGASIGSFLGLVIDRFPEQPIIAPSSHCNACKRRLKAWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=750874 OHM52_RS03335 WP_024417715.1 670863..671507(-) (cclA/cilC) [Streptococcus suis strain TRG6]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GCCCATTATCGCCCCTTCTAGTCACTGTAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACTTAATTCCAGTCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGATTGGAATTCTTAGCCGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTTGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTCTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGCTCCCTCCTAGGGCTTCT
TGTCTTCGCCATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTATTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.057

99.065

0.486
  cclA/cilC Streptococcus pneumoniae Rx1

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae D39

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae R6

48.544

96.262

0.467
  cclA/cilC Streptococcus pneumoniae TIGR4

46.698

99.065

0.463
  cclA/cilC Streptococcus mitis NCTC 12261

45.283

99.065

0.449