Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | NT398_RS14480 | Genome accession | NZ_CP109933 |
| Coordinates | 2884724..2885194 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain SASWT1215 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2848805..2890893 | 2884724..2885194 | within | 0 |
Gene organization within MGE regions
Location: 2848805..2890893
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NT398_RS14240 (NT398_14245) | groES | 2848805..2849089 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| NT398_RS14245 (NT398_14250) | groL | 2849165..2850781 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| NT398_RS14250 (NT398_14255) | - | 2850850..2852022 (-) | 1173 | WP_000179343.1 | tyrosine-type recombinase/integrase | - |
| NT398_RS14255 (NT398_14260) | - | 2852036..2852710 (-) | 675 | WP_000620857.1 | helix-turn-helix transcriptional regulator | - |
| NT398_RS14260 (NT398_14265) | - | 2852883..2853101 (+) | 219 | WP_000153640.1 | helix-turn-helix transcriptional regulator | - |
| NT398_RS14265 (NT398_14270) | - | 2853106..2853423 (+) | 318 | WP_000481967.1 | helix-turn-helix domain-containing protein | - |
| NT398_RS14270 (NT398_14275) | - | 2853420..2853566 (+) | 147 | WP_000784885.1 | hypothetical protein | - |
| NT398_RS14275 (NT398_14280) | - | 2853583..2853768 (+) | 186 | WP_223200634.1 | pathogenicity island protein | - |
| NT398_RS14280 (NT398_14285) | - | 2853771..2854097 (+) | 327 | WP_001078344.1 | DUF1474 family protein | - |
| NT398_RS14285 (NT398_14290) | - | 2854162..2855031 (+) | 870 | WP_001002689.1 | primase alpha helix C-terminal domain-containing protein | - |
| NT398_RS14290 (NT398_14295) | - | 2855045..2856754 (+) | 1710 | WP_000447473.1 | DUF927 domain-containing protein | - |
| NT398_RS14295 (NT398_14300) | - | 2857064..2857444 (+) | 381 | WP_000356942.1 | hypothetical protein | - |
| NT398_RS14300 (NT398_14305) | - | 2857441..2858082 (+) | 642 | WP_001047698.1 | hypothetical protein | - |
| NT398_RS14305 (NT398_14310) | - | 2858532..2858873 (+) | 342 | WP_001190615.1 | hypothetical protein | - |
| NT398_RS14310 (NT398_14315) | - | 2858885..2859463 (+) | 579 | WP_000846280.1 | hypothetical protein | - |
| NT398_RS14315 (NT398_14320) | - | 2859481..2859699 (+) | 219 | WP_000448770.1 | capsid morphogenesis B protein | - |
| NT398_RS14320 (NT398_14325) | - | 2859750..2860277 (+) | 528 | WP_000771368.1 | spore coat protein | - |
| NT398_RS14325 (NT398_14330) | - | 2860280..2860621 (+) | 342 | WP_000358774.1 | hypothetical protein | - |
| NT398_RS14330 (NT398_14335) | - | 2860618..2861187 (+) | 570 | WP_063653148.1 | terminase small subunit | - |
| NT398_RS14335 (NT398_14340) | tst | 2861342..2862046 (-) | 705 | WP_001035599.1 | toxic shock syndrome toxin TSST-1 | - |
| NT398_RS14340 (NT398_14345) | - | 2862925..2863485 (-) | 561 | WP_001035616.1 | DUF4888 domain-containing protein | - |
| NT398_RS14345 (NT398_14350) | sec3 | 2864273..2865073 (+) | 801 | WP_000278088.1 | staphylococcal enterotoxin type C3 | - |
| NT398_RS14350 (NT398_14355) | sel | 2865242..2865964 (-) | 723 | WP_000746599.1 | staphylococcal enterotoxin type L | - |
| NT398_RS14355 (NT398_14360) | - | 2866981..2868288 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| NT398_RS14360 (NT398_14365) | - | 2868732..2869955 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| NT398_RS14365 (NT398_14370) | lukH | 2870391..2871446 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| NT398_RS14370 (NT398_14375) | lukG | 2871468..2872484 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| NT398_RS14375 (NT398_14380) | sph | 2872722..2873552 (-) | 831 | Protein_2800 | sphingomyelin phosphodiesterase | - |
| NT398_RS14380 (NT398_14385) | - | 2873603..2874640 (-) | 1038 | WP_000857198.1 | site-specific integrase | - |
| NT398_RS14385 (NT398_14390) | - | 2874813..2875352 (-) | 540 | WP_000391618.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| NT398_RS14390 (NT398_14395) | - | 2875492..2875659 (-) | 168 | WP_000705238.1 | hypothetical protein | - |
| NT398_RS14395 (NT398_14400) | - | 2875859..2876044 (-) | 186 | WP_001089804.1 | hypothetical protein | - |
| NT398_RS14400 (NT398_14405) | - | 2876031..2876186 (-) | 156 | WP_001049399.1 | hypothetical protein | - |
| NT398_RS14405 (NT398_14410) | - | 2876198..2876905 (-) | 708 | WP_000094093.1 | XRE family transcriptional regulator | - |
| NT398_RS14410 (NT398_14415) | - | 2877076..2877315 (+) | 240 | WP_000548578.1 | helix-turn-helix transcriptional regulator | - |
| NT398_RS14415 (NT398_14420) | - | 2877328..2877588 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| NT398_RS14420 (NT398_14425) | - | 2877612..2878151 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| NT398_RS14425 (NT398_14430) | - | 2878208..2878960 (+) | 753 | WP_001148618.1 | phage antirepressor KilAC domain-containing protein | - |
| NT398_RS14430 (NT398_14435) | - | 2878977..2879171 (+) | 195 | WP_000388066.1 | hypothetical protein | - |
| NT398_RS14435 (NT398_14440) | - | 2879202..2879342 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| NT398_RS14440 (NT398_14445) | - | 2879357..2879989 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| NT398_RS14445 (NT398_14450) | - | 2880048..2880368 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| NT398_RS14450 (NT398_14455) | - | 2880365..2880526 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| NT398_RS14455 (NT398_14460) | - | 2880619..2880879 (+) | 261 | WP_000291489.1 | DUF1108 family protein | - |
| NT398_RS14460 (NT398_14465) | - | 2880888..2881151 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| NT398_RS14465 (NT398_14470) | - | 2881160..2883103 (+) | 1944 | WP_000700547.1 | ATP-binding protein | - |
| NT398_RS14470 (NT398_14475) | - | 2883105..2884025 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| NT398_RS14475 (NT398_14480) | - | 2884106..2884723 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| NT398_RS14480 (NT398_14485) | ssbA | 2884724..2885194 (+) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| NT398_RS14485 (NT398_14490) | - | 2885224..2886108 (+) | 885 | WP_000148301.1 | DnaD domain protein | - |
| NT398_RS14490 (NT398_14495) | - | 2886115..2886333 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| NT398_RS14495 (NT398_14500) | - | 2886342..2886746 (+) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| NT398_RS14500 (NT398_14505) | - | 2886759..2887127 (+) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| NT398_RS14505 (NT398_14510) | - | 2887131..2887373 (+) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| NT398_RS14510 (NT398_14515) | - | 2887438..2887887 (+) | 450 | WP_000982711.1 | YopX family protein | - |
| NT398_RS14515 (NT398_14520) | - | 2887884..2888393 (+) | 510 | WP_001105598.1 | hypothetical protein | - |
| NT398_RS14520 (NT398_14525) | - | 2888390..2888800 (+) | 411 | WP_138273640.1 | acetyltransferase | - |
| NT398_RS14525 (NT398_14530) | - | 2888793..2889329 (+) | 537 | WP_001066444.1 | dUTPase | - |
| NT398_RS14530 (NT398_14535) | - | 2889366..2889572 (+) | 207 | WP_000195820.1 | DUF1381 domain-containing protein | - |
| NT398_RS14535 (NT398_14540) | - | 2889569..2889718 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| NT398_RS14540 (NT398_14545) | - | 2889718..2889918 (+) | 201 | WP_000265039.1 | DUF1514 family protein | - |
| NT398_RS14545 (NT398_14550) | - | 2889946..2890362 (+) | 417 | WP_000590126.1 | hypothetical protein | - |
| NT398_RS14550 (NT398_14555) | - | 2890594..2890893 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=750844 NT398_RS14480 WP_000934770.1 2884724..2885194(+) (ssbA) [Staphylococcus aureus strain SASWT1215]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=750844 NT398_RS14480 WP_000934770.1 2884724..2885194(+) (ssbA) [Staphylococcus aureus strain SASWT1215]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |