Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CLAM6_RS16790 Genome accession   NZ_AP021868
Coordinates   4021595..4022251 (-) Length   218 a.a.
NCBI ID   WP_043334816.1    Uniprot ID   A0A5K7Y8U9
Organism   Cobetia sp. AM6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4016595..4027251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLAM6_RS16775 (CLAM6_33210) - 4016915..4017634 (-) 720 WP_153637011.1 lysophospholipid acyltransferase family protein -
  CLAM6_RS16780 (CLAM6_33220) - 4017695..4018579 (-) 885 WP_043334814.1 sugar nucleotide-binding protein -
  CLAM6_RS16785 (CLAM6_33230) - 4018642..4021149 (-) 2508 WP_153636684.1 bifunctional diguanylate cyclase/phosphodiesterase -
  CLAM6_RS16790 (CLAM6_33240) ssb 4021595..4022251 (-) 657 WP_043334816.1 single-stranded DNA-binding protein Machinery gene
  CLAM6_RS16795 (CLAM6_33250) - 4022339..4023754 (-) 1416 WP_052384727.1 MFS transporter -
  CLAM6_RS16800 (CLAM6_33260) uvrA 4023962..4026841 (+) 2880 WP_153636685.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23530.51 Da        Isoelectric Point: 5.2339

>NTDB_id=75083 CLAM6_RS16790 WP_043334816.1 4021595..4022251(-) (ssb) [Cobetia sp. AM6]
MARGVNKVILIGNLGQDPEVRFTPSGSAVCNLNLATTDTWNDRQSGQRQERTEWHRVVMFNKLAEVAQQYVKKGSRLYIE
GRLQTRKWQDQNGNDRYSTEIVANDMQMLDTRGEGGGGNFAGGRPQQAPQQGGQQPAAAPQQGGQFGGQQPAPQQGGQFG
GQQPAPQQGGQFGGQQAAPQQGNNFGGQQPAQQNNSQNNNFGAPPAGSFDDFDDEIPF

Nucleotide


Download         Length: 657 bp        

>NTDB_id=75083 CLAM6_RS16790 WP_043334816.1 4021595..4022251(-) (ssb) [Cobetia sp. AM6]
ATGGCTCGTGGCGTAAACAAGGTCATTCTGATCGGTAATCTCGGTCAAGACCCGGAAGTTCGCTTCACCCCGTCCGGTAG
TGCGGTGTGCAACCTGAACCTCGCGACGACGGACACCTGGAATGATCGCCAGAGCGGTCAGCGTCAGGAACGTACCGAAT
GGCACCGTGTGGTGATGTTCAACAAGCTGGCTGAAGTGGCCCAGCAATACGTCAAGAAAGGCTCACGCCTGTATATCGAA
GGCCGCCTGCAGACGCGCAAGTGGCAGGATCAGAACGGCAATGACCGTTACAGCACCGAAATCGTGGCCAACGATATGCA
GATGCTGGATACGCGTGGTGAAGGTGGCGGTGGCAACTTCGCTGGTGGTCGCCCGCAGCAGGCGCCTCAGCAGGGTGGCC
AGCAACCGGCCGCAGCCCCCCAGCAGGGTGGCCAGTTTGGTGGTCAGCAGCCGGCCCCGCAGCAAGGTGGCCAGTTCGGT
GGTCAGCAGCCAGCCCCTCAGCAAGGCGGTCAGTTCGGTGGTCAGCAGGCGGCCCCTCAGCAGGGCAACAACTTCGGTGG
CCAGCAGCCTGCCCAGCAGAACAACTCCCAGAACAACAATTTCGGTGCGCCGCCCGCGGGCAGCTTCGATGATTTCGATG
ATGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K7Y8U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.091

100

0.495
  ssb Glaesserella parasuis strain SC1401

44.545

100

0.45
  ssb Neisseria gonorrhoeae MS11

43.256

98.624

0.427
  ssb Neisseria meningitidis MC58

42.791

98.624

0.422

Multiple sequence alignment