Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OK116_RS08825 | Genome accession | NZ_CP109897 |
| Coordinates | 1870770..1871216 (+) | Length | 148 a.a. |
| NCBI ID | WP_004088866.1 | Uniprot ID | Q87B55 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain XYL461 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1863417..1884567 | 1870770..1871216 | within | 0 |
Gene organization within MGE regions
Location: 1863417..1884567
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OK116_RS08780 (OK116_08765) | - | 1863417..1863932 (-) | 516 | WP_004088839.1 | phage portal protein | - |
| OK116_RS08785 (OK116_08770) | - | 1863929..1864165 (-) | 237 | WP_004088842.1 | hypothetical protein | - |
| OK116_RS08790 (OK116_08775) | - | 1864242..1866341 (-) | 2100 | WP_004088845.1 | phage terminase large subunit family protein | - |
| OK116_RS08795 (OK116_08780) | - | 1866338..1866946 (-) | 609 | WP_004088848.1 | hypothetical protein | - |
| OK116_RS08800 (OK116_08785) | - | 1867343..1868812 (-) | 1470 | WP_004088851.1 | VapE domain-containing protein | - |
| OK116_RS08805 (OK116_08790) | - | 1868809..1869864 (-) | 1056 | WP_004088854.1 | DNA primase | - |
| OK116_RS08810 (OK116_08795) | - | 1869863..1870264 (+) | 402 | WP_004088857.1 | hypothetical protein | - |
| OK116_RS08815 (OK116_08800) | - | 1870366..1870539 (-) | 174 | WP_155115078.1 | hypothetical protein | - |
| OK116_RS08820 (OK116_08805) | - | 1870514..1870786 (+) | 273 | WP_004088863.1 | DUF5131 family protein | - |
| OK116_RS08825 (OK116_08810) | ssb | 1870770..1871216 (+) | 447 | WP_004088866.1 | single-stranded DNA-binding protein | Machinery gene |
| OK116_RS08830 (OK116_08815) | - | 1871235..1871510 (+) | 276 | WP_011098179.1 | hypothetical protein | - |
| OK116_RS08835 (OK116_08820) | - | 1871510..1872683 (+) | 1174 | Protein_1687 | integrase | - |
| OK116_RS08840 (OK116_08825) | - | 1872993..1873196 (+) | 204 | WP_004089756.1 | DUF4102 domain-containing protein | - |
| OK116_RS08845 (OK116_08830) | - | 1873263..1873670 (+) | 408 | WP_012382712.1 | hypothetical protein | - |
| OK116_RS08850 (OK116_08835) | - | 1873871..1873996 (-) | 126 | WP_256626233.1 | hypothetical protein | - |
| OK116_RS08855 (OK116_08840) | - | 1874150..1875604 (-) | 1455 | WP_004089759.1 | class I SAM-dependent methyltransferase | - |
| OK116_RS08860 (OK116_08845) | - | 1875601..1876290 (-) | 690 | WP_228446149.1 | restriction endonuclease | - |
| OK116_RS08865 (OK116_08850) | - | 1876365..1876574 (+) | 210 | WP_126709098.1 | hypothetical protein | - |
| OK116_RS08875 (OK116_08860) | - | 1876808..1877263 (-) | 456 | WP_012382713.1 | type IV pilin protein | - |
| OK116_RS08880 (OK116_08865) | - | 1877260..1881825 (-) | 4566 | WP_004089764.1 | pilus assembly protein | - |
| OK116_RS08885 (OK116_08870) | - | 1881829..1882323 (-) | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| OK116_RS08890 (OK116_08875) | - | 1882323..1883579 (-) | 1257 | WP_004089768.1 | PilW family protein | - |
| OK116_RS08895 (OK116_08880) | pilV | 1883576..1884058 (-) | 483 | WP_004083567.1 | type IV pilus modification protein PilV | - |
| OK116_RS08900 (OK116_08885) | - | 1884055..1884567 (-) | 513 | WP_004089770.1 | Tfp pilus assembly protein FimT/FimU | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16607.50 Da Isoelectric Point: 7.3545
>NTDB_id=750456 OK116_RS08825 WP_004088866.1 1870770..1871216(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain XYL461]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=750456 OK116_RS08825 WP_004088866.1 1870770..1871216(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain XYL461]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
40.909 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.446 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |