Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   St703_RS15725 Genome accession   NZ_AP021853
Coordinates   3292538..3293056 (-) Length   172 a.a.
NCBI ID   WP_028978123.1    Uniprot ID   -
Organism   Sporolactobacillus terrae strain 70-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3287538..3298056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  St703_RS15700 (St703_31350) - 3288724..3289659 (+) 936 WP_028978118.1 cation diffusion facilitator family transporter -
  St703_RS15705 (St703_31360) - 3289757..3290233 (+) 477 WP_139693222.1 chemotaxis protein CheW -
  St703_RS15710 (St703_31370) - 3290279..3290926 (+) 648 WP_028978120.1 HD domain-containing protein -
  St703_RS15715 (St703_31380) - 3291098..3291667 (+) 570 WP_037564048.1 DUF420 domain-containing protein -
  St703_RS15720 (St703_31390) rpsR 3292272..3292502 (-) 231 WP_028978122.1 30S ribosomal protein S18 -
  St703_RS15725 (St703_31400) ssbA 3292538..3293056 (-) 519 WP_028978123.1 single-stranded DNA-binding protein Machinery gene
  St703_RS15730 (St703_31410) rpsF 3293087..3293392 (-) 306 WP_028978124.1 30S ribosomal protein S6 -
  St703_RS15735 (St703_31420) ychF 3293501..3294601 (-) 1101 WP_028978125.1 redox-regulated ATPase YchF -
  St703_RS15740 (St703_31430) - 3294659..3294886 (-) 228 WP_028978126.1 DUF951 domain-containing protein -
  St703_RS15745 (St703_31440) - 3294928..3296310 (-) 1383 WP_028978127.1 glycine--tRNA ligase -
  St703_RS15750 (St703_31450) yyaC 3296758..3297360 (+) 603 WP_028978128.1 spore protease YyaC -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18600.41 Da        Isoelectric Point: 4.9222

>NTDB_id=75044 St703_RS15725 WP_028978123.1 3292538..3293056(-) (ssbA) [Sporolactobacillus terrae strain 70-3]
MINRVVLVGRLTKNPELRYTPNGVAVTSFTIAVNRPFSNQQGERDADFIPVVVWRRQAENAANFLQKGSLAGVDGRIQTR
NYENNEGRRVYVTEVVADSVQFLEPKGSRNNNGGNYAPSAPSAPANQQRGGFAPSSNNAMNGAGQDQGAPSFDDPFAGDS
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=75044 St703_RS15725 WP_028978123.1 3292538..3293056(-) (ssbA) [Sporolactobacillus terrae strain 70-3]
ATGATCAATCGCGTTGTTTTGGTTGGGCGGCTGACGAAGAATCCTGAATTGCGTTATACGCCGAACGGTGTCGCTGTAAC
GAGTTTTACCATTGCGGTAAACCGCCCTTTTTCGAACCAACAAGGGGAACGAGATGCCGATTTTATTCCTGTCGTTGTTT
GGAGAAGACAAGCCGAAAATGCTGCTAATTTCCTGCAAAAAGGAAGTCTTGCCGGCGTTGACGGCCGCATTCAGACACGC
AATTATGAGAATAATGAAGGCCGGCGGGTTTATGTGACTGAGGTAGTTGCCGACAGCGTTCAATTTCTTGAACCAAAAGG
ATCAAGAAATAACAATGGTGGTAATTACGCCCCAAGTGCTCCTTCAGCACCGGCCAACCAGCAGCGCGGCGGCTTTGCAC
CATCGAGCAATAATGCAATGAATGGTGCCGGCCAAGACCAGGGCGCTCCTTCTTTTGATGATCCTTTCGCCGGCGACAGT
AAACCGATTGATATATCGGATGACGATCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.791

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

51.648

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

61.628

0.378
  ssb Glaesserella parasuis strain SC1401

34.831

100

0.36

Multiple sequence alignment