Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OK118_RS08610 | Genome accession | NZ_CP109894 |
| Coordinates | 1867832..1868278 (+) | Length | 148 a.a. |
| NCBI ID | WP_004088866.1 | Uniprot ID | Q87B55 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain CFBP8351 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1860479..1881629 | 1867832..1868278 | within | 0 |
Gene organization within MGE regions
Location: 1860479..1881629
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OK118_RS08565 (OK118_08565) | - | 1860479..1860994 (-) | 516 | WP_004088839.1 | phage portal protein | - |
| OK118_RS08570 (OK118_08570) | - | 1860991..1861227 (-) | 237 | WP_004088842.1 | hypothetical protein | - |
| OK118_RS08575 (OK118_08575) | - | 1861304..1863403 (-) | 2100 | WP_004088845.1 | phage terminase large subunit family protein | - |
| OK118_RS08580 (OK118_08580) | - | 1863400..1864008 (-) | 609 | WP_004088848.1 | hypothetical protein | - |
| OK118_RS08585 (OK118_08585) | - | 1864405..1865874 (-) | 1470 | WP_004088851.1 | VapE domain-containing protein | - |
| OK118_RS08590 (OK118_08590) | - | 1865871..1866926 (-) | 1056 | WP_004088854.1 | DNA primase | - |
| OK118_RS08595 (OK118_08595) | - | 1866925..1867326 (+) | 402 | WP_004088857.1 | hypothetical protein | - |
| OK118_RS08600 (OK118_08600) | - | 1867428..1867601 (-) | 174 | WP_155115078.1 | hypothetical protein | - |
| OK118_RS08605 (OK118_08605) | - | 1867576..1867848 (+) | 273 | WP_004088863.1 | DUF5131 family protein | - |
| OK118_RS08610 (OK118_08610) | ssb | 1867832..1868278 (+) | 447 | WP_004088866.1 | single-stranded DNA-binding protein | Machinery gene |
| OK118_RS08615 (OK118_08615) | - | 1868297..1868572 (+) | 276 | WP_011098179.1 | hypothetical protein | - |
| OK118_RS08620 (OK118_08620) | - | 1868572..1869745 (+) | 1174 | Protein_1686 | integrase | - |
| OK118_RS08625 (OK118_08625) | - | 1870055..1870258 (+) | 204 | WP_004089756.1 | DUF4102 domain-containing protein | - |
| OK118_RS08630 (OK118_08630) | - | 1870325..1870732 (+) | 408 | WP_012382712.1 | hypothetical protein | - |
| OK118_RS08635 (OK118_08635) | - | 1870933..1871058 (-) | 126 | WP_256626233.1 | hypothetical protein | - |
| OK118_RS08640 (OK118_08640) | - | 1871212..1872666 (-) | 1455 | WP_004089759.1 | class I SAM-dependent methyltransferase | - |
| OK118_RS08645 (OK118_08645) | - | 1872663..1873352 (-) | 690 | WP_228446149.1 | restriction endonuclease | - |
| OK118_RS08650 (OK118_08650) | - | 1873427..1873636 (+) | 210 | WP_126709098.1 | hypothetical protein | - |
| OK118_RS08660 (OK118_08660) | - | 1873870..1874325 (-) | 456 | WP_012382713.1 | type IV pilin protein | - |
| OK118_RS08665 (OK118_08665) | - | 1874322..1878887 (-) | 4566 | WP_004089764.1 | pilus assembly protein | - |
| OK118_RS08670 (OK118_08670) | - | 1878891..1879385 (-) | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| OK118_RS08675 (OK118_08675) | - | 1879385..1880641 (-) | 1257 | WP_004089768.1 | PilW family protein | - |
| OK118_RS08680 (OK118_08680) | pilV | 1880638..1881120 (-) | 483 | WP_004083567.1 | type IV pilus modification protein PilV | - |
| OK118_RS08685 (OK118_08685) | - | 1881117..1881629 (-) | 513 | WP_004089770.1 | Tfp pilus assembly protein FimT/FimU | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16607.50 Da Isoelectric Point: 7.3545
>NTDB_id=750439 OK118_RS08610 WP_004088866.1 1867832..1868278(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain CFBP8351]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=750439 OK118_RS08610 WP_004088866.1 1867832..1868278(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain CFBP8351]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
40.909 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.446 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |