Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OK118_RS03355 Genome accession   NZ_CP109894
Coordinates   782700..783194 (+) Length   164 a.a.
NCBI ID   WP_004089231.1    Uniprot ID   Q87DQ5
Organism   Xylella fastidiosa subsp. fastidiosa strain CFBP8351     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 777700..788194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK118_RS03340 (OK118_03340) cyoB 778029..780026 (-) 1998 WP_004083794.1 cytochrome o ubiquinol oxidase subunit I -
  OK118_RS03345 (OK118_03345) cyoA 780020..780979 (-) 960 WP_011097726.1 ubiquinol oxidase subunit II -
  OK118_RS03350 (OK118_03350) - 781448..782449 (-) 1002 WP_004083792.1 polyprenyl synthetase family protein -
  OK118_RS03355 (OK118_03355) ssb 782700..783194 (+) 495 WP_004089231.1 single-stranded DNA-binding protein Machinery gene
  OK118_RS03360 (OK118_03360) - 783470..783634 (+) 165 WP_014607674.1 hypothetical protein -
  OK118_RS03365 (OK118_03365) - 784843..785754 (+) 912 WP_004089229.1 class I SAM-dependent methyltransferase -
  OK118_RS03370 (OK118_03370) - 786067..787263 (+) 1197 WP_024749296.1 cation:proton antiporter -
  OK118_RS03375 (OK118_03375) gloA 787424..787951 (-) 528 WP_004089226.1 lactoylglutathione lyase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18227.20 Da        Isoelectric Point: 5.9527

>NTDB_id=750433 OK118_RS03355 WP_004089231.1 782700..783194(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain CFBP8351]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKDGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQTRQPSQSPQSSPPPMDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=750433 OK118_RS03355 WP_004089231.1 782700..783194(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain CFBP8351]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAATCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGATGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGCCAGGATGGCCAAGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGTGATGGTGGCGGTATGGGCGGGGGCGGTGAGCGCCCACAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGACCCGTCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87DQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.53
  ssb Glaesserella parasuis strain SC1401

46.927

100

0.512
  ssb Neisseria meningitidis MC58

41.618

100

0.439
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.433