Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OK113_RS08435 | Genome accession | NZ_CP109891 |
| Coordinates | 1844836..1845282 (+) | Length | 148 a.a. |
| NCBI ID | WP_004088866.1 | Uniprot ID | Q87B55 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain CFBP8083 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1837483..1858633 | 1844836..1845282 | within | 0 |
Gene organization within MGE regions
Location: 1837483..1858633
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OK113_RS08390 (OK113_08390) | - | 1837483..1837998 (-) | 516 | WP_004088839.1 | phage portal protein | - |
| OK113_RS08395 (OK113_08395) | - | 1837995..1838231 (-) | 237 | WP_004088842.1 | hypothetical protein | - |
| OK113_RS08400 (OK113_08400) | - | 1838308..1840407 (-) | 2100 | WP_004088845.1 | phage terminase large subunit family protein | - |
| OK113_RS08405 (OK113_08405) | - | 1840404..1841012 (-) | 609 | WP_004088848.1 | hypothetical protein | - |
| OK113_RS08410 (OK113_08410) | - | 1841409..1842878 (-) | 1470 | WP_038233147.1 | VapE domain-containing protein | - |
| OK113_RS08415 (OK113_08415) | - | 1842875..1843930 (-) | 1056 | WP_038233149.1 | DNA primase | - |
| OK113_RS08420 (OK113_08420) | - | 1843929..1844330 (+) | 402 | WP_038233152.1 | hypothetical protein | - |
| OK113_RS08425 (OK113_08425) | - | 1844432..1844605 (-) | 174 | WP_155115078.1 | hypothetical protein | - |
| OK113_RS08430 (OK113_08430) | - | 1844580..1844852 (+) | 273 | WP_004088863.1 | DUF5131 family protein | - |
| OK113_RS08435 (OK113_08435) | ssb | 1844836..1845282 (+) | 447 | WP_004088866.1 | single-stranded DNA-binding protein | Machinery gene |
| OK113_RS08440 (OK113_08440) | - | 1845301..1845576 (+) | 276 | WP_011098179.1 | hypothetical protein | - |
| OK113_RS08445 (OK113_08445) | - | 1845576..1846749 (+) | 1174 | Protein_1650 | integrase | - |
| OK113_RS08450 (OK113_08450) | - | 1847059..1847262 (+) | 204 | WP_004089756.1 | DUF4102 domain-containing protein | - |
| OK113_RS08455 (OK113_08455) | - | 1847329..1847736 (+) | 408 | WP_012382712.1 | hypothetical protein | - |
| OK113_RS08460 (OK113_08460) | - | 1847937..1848062 (-) | 126 | WP_256626233.1 | hypothetical protein | - |
| OK113_RS08465 (OK113_08465) | - | 1848216..1849670 (-) | 1455 | WP_004089759.1 | class I SAM-dependent methyltransferase | - |
| OK113_RS08470 (OK113_08470) | - | 1849667..1850356 (-) | 690 | WP_228446149.1 | restriction endonuclease | - |
| OK113_RS08480 (OK113_08480) | - | 1850874..1851329 (-) | 456 | WP_012382713.1 | type IV pilin protein | - |
| OK113_RS08485 (OK113_08485) | - | 1851326..1855891 (-) | 4566 | WP_004089764.1 | pilus assembly protein | - |
| OK113_RS08490 (OK113_08490) | - | 1855895..1856389 (-) | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| OK113_RS08495 (OK113_08495) | - | 1856389..1857645 (-) | 1257 | WP_004089768.1 | PilW family protein | - |
| OK113_RS08500 (OK113_08500) | pilV | 1857642..1858124 (-) | 483 | WP_004083567.1 | type IV pilus modification protein PilV | - |
| OK113_RS08505 (OK113_08505) | - | 1858121..1858633 (-) | 513 | WP_004089770.1 | Tfp pilus assembly protein FimT/FimU | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16607.50 Da Isoelectric Point: 7.3545
>NTDB_id=750422 OK113_RS08435 WP_004088866.1 1844836..1845282(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain CFBP8083]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=750422 OK113_RS08435 WP_004088866.1 1844836..1845282(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain CFBP8083]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
40.909 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.446 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |