Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OK119_RS08445 | Genome accession | NZ_CP109890 |
| Coordinates | 1843692..1844138 (+) | Length | 148 a.a. |
| NCBI ID | WP_004088866.1 | Uniprot ID | Q87B55 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain WM1-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1836339..1857489 | 1843692..1844138 | within | 0 |
Gene organization within MGE regions
Location: 1836339..1857489
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OK119_RS08400 (OK119_08400) | - | 1836339..1836854 (-) | 516 | WP_004088839.1 | phage portal protein | - |
| OK119_RS08405 (OK119_08405) | - | 1836851..1837087 (-) | 237 | WP_004088842.1 | hypothetical protein | - |
| OK119_RS08410 (OK119_08410) | - | 1837164..1839263 (-) | 2100 | WP_004088845.1 | phage terminase large subunit family protein | - |
| OK119_RS08415 (OK119_08415) | - | 1839260..1839868 (-) | 609 | WP_004088848.1 | hypothetical protein | - |
| OK119_RS08420 (OK119_08420) | - | 1840265..1841734 (-) | 1470 | WP_038233147.1 | VapE domain-containing protein | - |
| OK119_RS08425 (OK119_08425) | - | 1841731..1842786 (-) | 1056 | WP_038233149.1 | DNA primase | - |
| OK119_RS08430 (OK119_08430) | - | 1842785..1843186 (+) | 402 | WP_038233152.1 | hypothetical protein | - |
| OK119_RS08435 (OK119_08435) | - | 1843288..1843461 (-) | 174 | WP_155115078.1 | hypothetical protein | - |
| OK119_RS08440 (OK119_08440) | - | 1843436..1843708 (+) | 273 | WP_004088863.1 | DUF5131 family protein | - |
| OK119_RS08445 (OK119_08445) | ssb | 1843692..1844138 (+) | 447 | WP_004088866.1 | single-stranded DNA-binding protein | Machinery gene |
| OK119_RS08450 (OK119_08450) | - | 1844157..1844432 (+) | 276 | WP_011098179.1 | hypothetical protein | - |
| OK119_RS08455 (OK119_08455) | - | 1844432..1845605 (+) | 1174 | Protein_1652 | integrase | - |
| OK119_RS08460 (OK119_08460) | - | 1845915..1846118 (+) | 204 | WP_004089756.1 | DUF4102 domain-containing protein | - |
| OK119_RS08465 (OK119_08465) | - | 1846185..1846592 (+) | 408 | WP_012382712.1 | hypothetical protein | - |
| OK119_RS08470 (OK119_08470) | - | 1846793..1846918 (-) | 126 | WP_256626233.1 | hypothetical protein | - |
| OK119_RS08475 (OK119_08475) | - | 1847072..1848526 (-) | 1455 | WP_004089759.1 | class I SAM-dependent methyltransferase | - |
| OK119_RS08480 (OK119_08480) | - | 1848523..1849212 (-) | 690 | WP_228446149.1 | restriction endonuclease | - |
| OK119_RS08485 (OK119_08485) | - | 1849267..1849536 (+) | 270 | WP_140161513.1 | hypothetical protein | - |
| OK119_RS08495 (OK119_08495) | - | 1849730..1850185 (-) | 456 | WP_012382713.1 | type IV pilin protein | - |
| OK119_RS08500 (OK119_08500) | - | 1850182..1854747 (-) | 4566 | WP_004089764.1 | pilus assembly protein | - |
| OK119_RS08505 (OK119_08505) | - | 1854751..1855245 (-) | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| OK119_RS08510 (OK119_08510) | - | 1855245..1856501 (-) | 1257 | WP_004089768.1 | PilW family protein | - |
| OK119_RS08515 (OK119_08515) | pilV | 1856498..1856980 (-) | 483 | WP_004083567.1 | type IV pilus modification protein PilV | - |
| OK119_RS08520 (OK119_08520) | - | 1856977..1857489 (-) | 513 | WP_004089770.1 | Tfp pilus assembly protein FimT/FimU | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16607.50 Da Isoelectric Point: 7.3545
>NTDB_id=750405 OK119_RS08445 WP_004088866.1 1843692..1844138(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain WM1-1]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=750405 OK119_RS08445 WP_004088866.1 1843692..1844138(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain WM1-1]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
40.909 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.446 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |