Detailed information NTG0075040

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: OCX18_RS08250
• Genome accession: NZ_AP024728
• Coordinates: 1704988..1705992 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005768.1
• Uniprot ID: P66757
• Organism: Staphylococcus aureus strain 59553
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1699988..1710992

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCX18_RS08235	yajC	1702520..1702780 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
OCX18_RS08240	tgt	1702799..1703938 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
OCX18_RS08245	queA	1703961..1704986 (-)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
OCX18_RS08250	ruvB	1704988..1705992 (-)	1005	WP_001005768.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
OCX18_RS08255	ruvA	1706024..1706626 (-)	603	WP_000271550.1	Holliday junction branch migration protein RuvA	Machinery gene
OCX18_RS08260	-	1706640..1707095 (-)	456	WP_000368902.1	ACT domain-containing protein	-
OCX18_RS08265	obgE	1707108..1708400 (-)	1293	WP_000496100.1	GTPase ObgE	-
OCX18_RS08270	rpmA	1708885..1709169 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
OCX18_RS08275	-	1709181..1709501 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
OCX18_RS08280	rplU	1709507..1709815 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
OCX18_RS08285	mreD	1710303..1710833 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37645.94 Da
• Isoelectric Point: 5.1876

>NTDB_id=75040 OCX18_RS08250 WP_001005768.1 1704988..1705992(-) (ruvB) [Staphylococcus aureus strain 59553]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERG

Nucleotide

• Length: 1005 bp

>NTDB_id=75040 OCX18_RS08250 WP_001005768.1 1704988..1705992(-) (ruvB) [Staphylococcus aureus strain 59553]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
ATTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAGCAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGGATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: P66757

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515