Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OK117_RS09595 | Genome accession | NZ_CP109886 |
| Coordinates | 2070771..2071217 (+) | Length | 148 a.a. |
| NCBI ID | WP_058564846.1 | Uniprot ID | A0AAJ5QZ32 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain CFBP8073 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2031440..2076270 | 2070771..2071217 | within | 0 |
Gene organization within MGE regions
Location: 2031440..2076270
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OK117_RS09320 (OK117_09335) | - | 2031494..2032567 (+) | 1074 | WP_058564469.1 | site-specific integrase | - |
| OK117_RS09325 (OK117_09340) | - | 2032890..2033177 (+) | 288 | WP_004083921.1 | BrnT family toxin | - |
| OK117_RS09330 (OK117_09345) | - | 2033161..2033454 (+) | 294 | WP_234759377.1 | BrnA antitoxin family protein | - |
| OK117_RS09335 (OK117_09350) | - | 2033566..2033763 (-) | 198 | WP_058565181.1 | hypothetical protein | - |
| OK117_RS09340 (OK117_09355) | - | 2034019..2034810 (-) | 792 | WP_040123228.1 | DNA adenine methylase | - |
| OK117_RS09345 (OK117_09360) | - | 2034877..2035083 (+) | 207 | WP_272141947.1 | hypothetical protein | - |
| OK117_RS09350 (OK117_09365) | - | 2035046..2035741 (-) | 696 | WP_272141949.1 | hypothetical protein | - |
| OK117_RS09355 (OK117_09370) | - | 2035816..2036235 (-) | 420 | WP_272141951.1 | hypothetical protein | - |
| OK117_RS09360 (OK117_09375) | - | 2036239..2036751 (-) | 513 | WP_004087261.1 | hypothetical protein | - |
| OK117_RS09365 (OK117_09380) | - | 2036744..2039569 (-) | 2826 | WP_272141953.1 | phage tail protein | - |
| OK117_RS09370 (OK117_09385) | - | 2039559..2039795 (-) | 237 | WP_057683576.1 | hypothetical protein | - |
| OK117_RS09375 (OK117_09390) | - | 2039792..2040220 (-) | 429 | WP_004086822.1 | hypothetical protein | - |
| OK117_RS09380 (OK117_09395) | - | 2040211..2041653 (-) | 1443 | WP_058565043.1 | DUF2163 domain-containing protein | - |
| OK117_RS09385 (OK117_09400) | - | 2041643..2042830 (-) | 1188 | WP_057683693.1 | hypothetical protein | - |
| OK117_RS09390 (OK117_09405) | - | 2042823..2045336 (-) | 2514 | WP_058565042.1 | hypothetical protein | - |
| OK117_RS09395 (OK117_09410) | - | 2045337..2045504 (-) | 168 | WP_004086814.1 | hypothetical protein | - |
| OK117_RS09400 (OK117_09415) | - | 2045501..2045947 (-) | 447 | WP_058565041.1 | DUF6631 family protein | - |
| OK117_RS09405 (OK117_09420) | - | 2045944..2046693 (-) | 750 | WP_057683696.1 | hypothetical protein | - |
| OK117_RS09410 (OK117_09425) | - | 2046690..2047163 (-) | 474 | WP_057683697.1 | hypothetical protein | - |
| OK117_RS09415 (OK117_09430) | - | 2047160..2047480 (-) | 321 | WP_004086810.1 | hypothetical protein | - |
| OK117_RS09420 (OK117_09435) | - | 2047477..2048262 (-) | 786 | WP_057683698.1 | hypothetical protein | - |
| OK117_RS09425 (OK117_09440) | - | 2048383..2048784 (-) | 402 | WP_233341831.1 | hypothetical protein | - |
| OK117_RS09430 (OK117_09445) | - | 2048784..2049287 (-) | 504 | WP_233337731.1 | lysozyme | - |
| OK117_RS09435 (OK117_09450) | - | 2049280..2049504 (-) | 225 | WP_081046874.1 | hypothetical protein | - |
| OK117_RS09440 (OK117_09455) | - | 2049576..2049935 (-) | 360 | WP_057683700.1 | DUF2190 family protein | - |
| OK117_RS09445 (OK117_09460) | - | 2050008..2052323 (-) | 2316 | WP_272141960.1 | ClpP-like prohead protease/major capsid protein fusion protein | - |
| OK117_RS09450 (OK117_09465) | - | 2052320..2053882 (-) | 1563 | WP_272141962.1 | phage portal protein | - |
| OK117_RS09455 (OK117_09470) | - | 2053879..2054115 (-) | 237 | WP_004088842.1 | hypothetical protein | - |
| OK117_RS09460 (OK117_09475) | - | 2054192..2056291 (-) | 2100 | WP_272141964.1 | phage terminase large subunit family protein | - |
| OK117_RS09465 (OK117_09480) | - | 2056288..2056896 (-) | 609 | WP_306308957.1 | hypothetical protein | - |
| OK117_RS09470 (OK117_09485) | - | 2057283..2058788 (-) | 1506 | WP_272141969.1 | VapE domain-containing protein | - |
| OK117_RS09475 (OK117_09490) | - | 2058785..2059840 (-) | 1056 | WP_272141971.1 | DNA primase | - |
| OK117_RS09480 (OK117_09495) | - | 2059839..2060240 (+) | 402 | WP_272141973.1 | hypothetical protein | - |
| OK117_RS09485 (OK117_09500) | - | 2060342..2060965 (-) | 624 | WP_272141976.1 | hypothetical protein | - |
| OK117_RS09490 (OK117_09505) | - | 2061023..2061373 (-) | 351 | WP_272141978.1 | hypothetical protein | - |
| OK117_RS09495 (OK117_09510) | - | 2061360..2061605 (-) | 246 | WP_071869972.1 | YdaS family helix-turn-helix protein | - |
| OK117_RS09500 (OK117_09515) | - | 2061669..2062709 (+) | 1041 | WP_272141982.1 | XRE family transcriptional regulator | - |
| OK117_RS09505 (OK117_09520) | - | 2062881..2063180 (+) | 300 | WP_128723870.1 | hypothetical protein | - |
| OK117_RS09510 (OK117_09525) | - | 2063305..2063583 (+) | 279 | WP_233341916.1 | hypothetical protein | - |
| OK117_RS09515 (OK117_09530) | - | 2063857..2064156 (+) | 300 | WP_128723870.1 | hypothetical protein | - |
| OK117_RS09520 (OK117_09535) | - | 2064198..2064455 (+) | 258 | WP_081046906.1 | hypothetical protein | - |
| OK117_RS09525 (OK117_09540) | - | 2064452..2064859 (+) | 408 | WP_233341877.1 | hypothetical protein | - |
| OK117_RS09530 (OK117_09545) | - | 2064871..2065137 (+) | 267 | WP_233341876.1 | hypothetical protein | - |
| OK117_RS09535 (OK117_09550) | - | 2065134..2065868 (+) | 735 | WP_272141998.1 | Bro-N domain-containing protein | - |
| OK117_RS09540 (OK117_09555) | - | 2065989..2066197 (+) | 209 | Protein_1864 | hypothetical protein | - |
| OK117_RS09545 (OK117_09560) | - | 2066875..2067339 (+) | 465 | WP_058565212.1 | DUF1566 domain-containing protein | - |
| OK117_RS09550 (OK117_09565) | - | 2067336..2067785 (+) | 450 | WP_128735287.1 | hypothetical protein | - |
| OK117_RS09555 (OK117_09570) | - | 2067782..2068003 (+) | 222 | WP_021358638.1 | hypothetical protein | - |
| OK117_RS09560 (OK117_09575) | - | 2068000..2068278 (+) | 279 | WP_057682790.1 | hypothetical protein | - |
| OK117_RS09565 (OK117_09580) | - | 2068275..2068541 (+) | 267 | WP_058565192.1 | hypothetical protein | - |
| OK117_RS09570 (OK117_09585) | - | 2068534..2068695 (+) | 162 | WP_196242788.1 | hypothetical protein | - |
| OK117_RS09575 (OK117_09590) | - | 2068673..2069206 (+) | 534 | WP_272142002.1 | pilin | - |
| OK117_RS09580 (OK117_09595) | - | 2069299..2070054 (+) | 756 | WP_272142004.1 | UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase | - |
| OK117_RS09585 (OK117_09600) | - | 2070051..2070581 (+) | 531 | WP_272142006.1 | hypothetical protein | - |
| OK117_RS09590 (OK117_09605) | - | 2070581..2070787 (+) | 207 | WP_233337694.1 | hypothetical protein | - |
| OK117_RS09595 (OK117_09610) | ssb | 2070771..2071217 (+) | 447 | WP_058564846.1 | single-stranded DNA-binding protein | Machinery gene |
| OK117_RS09600 (OK117_09615) | - | 2071236..2071562 (+) | 327 | WP_024749194.1 | pyocin activator PrtN family protein | - |
| OK117_RS09605 (OK117_09620) | - | 2072617..2072769 (-) | 153 | WP_155115079.1 | hypothetical protein | - |
| OK117_RS09610 (OK117_09625) | - | 2073337..2075382 (-) | 2046 | WP_038227902.1 | TonB-dependent receptor | - |
| OK117_RS09615 (OK117_09630) | - | 2075542..2075952 (+) | 411 | WP_004089891.1 | MerC domain-containing protein | - |
| OK117_RS09620 (OK117_09635) | - | 2076088..2076270 (+) | 183 | WP_004086643.1 | 30S ribosomal protein THX | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16634.53 Da Isoelectric Point: 7.3545
>NTDB_id=750388 OK117_RS09595 WP_058564846.1 2070771..2071217(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain CFBP8073]
MARGINKVILVGNLGNEPDIKYTQSGMTITNISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITNISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=750388 OK117_RS09595 WP_058564846.1 2070771..2071217(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain CFBP8073]
ATGGCACGCGGAATTAACAAGGTAATCCTAGTCGGCAACCTGGGGAACGAGCCGGATATCAAATACACCCAAAGCGGTAT
GACGATCACCAACATTAGCCTAGCAACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCCGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACACCACAGCGGCGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG
ATGGCACGCGGAATTAACAAGGTAATCCTAGTCGGCAACCTGGGGAACGAGCCGGATATCAAATACACCCAAAGCGGTAT
GACGATCACCAACATTAGCCTAGCAACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCCGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACACCACAGCGGCGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
41.477 |
100 |
0.493 |
| ssb | Neisseria meningitidis MC58 |
38.728 |
100 |
0.453 |
| ssb | Neisseria gonorrhoeae MS11 |
38.728 |
100 |
0.453 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |