Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   OHU65_RS25845 Genome accession   NZ_CP109859
Coordinates   4928631..4929128 (-) Length   165 a.a.
NCBI ID   WP_028409678.1    Uniprot ID   -
Organism   Priestia megaterium strain 207     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4923631..4934128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU65_RS25810 (OHU65_25810) csrA 4924087..4924317 (-) 231 WP_264408676.1 carbon storage regulator CsrA -
  OHU65_RS25815 (OHU65_25815) fliW 4924342..4924764 (-) 423 WP_264408677.1 flagellar assembly protein FliW -
  OHU65_RS25820 (OHU65_25820) flgL 4924845..4925726 (-) 882 WP_264408678.1 flagellar hook-associated protein FlgL -
  OHU65_RS25825 (OHU65_25825) flgK 4925729..4927240 (-) 1512 WP_014457792.1 flagellar hook-associated protein FlgK -
  OHU65_RS25830 (OHU65_25830) - 4927259..4927720 (-) 462 WP_264409273.1 flagellar protein FlgN -
  OHU65_RS25835 (OHU65_25835) flgM 4927742..4927996 (-) 255 WP_264408679.1 flagellar biosynthesis anti-sigma factor FlgM -
  OHU65_RS25840 (OHU65_25840) - 4928156..4928569 (-) 414 WP_264408680.1 TIGR03826 family flagellar region protein -
  OHU65_RS25845 (OHU65_25845) comFC 4928631..4929128 (-) 498 WP_028409678.1 ComF family protein Machinery gene
  OHU65_RS25850 (OHU65_25850) - 4929320..4930828 (-) 1509 WP_264408681.1 DEAD/DEAH box helicase -
  OHU65_RS25855 (OHU65_25855) - 4930908..4931753 (-) 846 WP_014457786.1 DegV family protein -
  OHU65_RS25860 (OHU65_25860) - 4931860..4932297 (-) 438 WP_221785856.1 YaaR family protein -
  OHU65_RS25865 (OHU65_25865) fliS 4932417..4932848 (-) 432 WP_221785936.1 flagellar export chaperone FliS -
  OHU65_RS25870 (OHU65_25870) - 4933272..4933955 (-) 684 WP_013059772.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19292.07 Da        Isoelectric Point: 8.4544

>NTDB_id=750291 OHU65_RS25845 WP_028409678.1 4928631..4929128(-) (comFC) [Priestia megaterium strain 207]
MDCQKWNDASFFNRSLYTYNDFMQSIIERFKFQGDYEIIQAFKEQWYKFYKKECNPKAILVPIPLTDERLYERGFNQSLA
LAELISDNIEMPLVRCSGTKQSKKNRRSRLAERLEFKVVDSSMVTNQEFLLIDDIYTTGATVRQAANCLQEAGARSVRSL
TLIRA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=750291 OHU65_RS25845 WP_028409678.1 4928631..4929128(-) (comFC) [Priestia megaterium strain 207]
ATGGACTGTCAGAAATGGAATGATGCTTCTTTTTTTAACCGTTCTCTTTATACGTACAATGATTTTATGCAAAGCATAAT
AGAACGTTTTAAATTTCAAGGAGATTATGAAATTATCCAAGCATTCAAGGAGCAGTGGTATAAGTTCTATAAAAAAGAAT
GTAATCCAAAAGCTATACTAGTTCCTATACCTTTAACGGACGAGAGATTATATGAGAGAGGGTTTAACCAATCTTTAGCA
CTAGCTGAACTGATCAGTGACAACATAGAAATGCCTCTTGTTCGCTGTTCAGGAACAAAGCAATCAAAGAAAAATAGGCG
AAGTCGGCTGGCAGAAAGGCTGGAATTTAAAGTAGTCGATTCCTCAATGGTTACGAATCAAGAATTTCTCTTGATTGATG
ACATTTATACAACAGGAGCAACCGTGCGCCAAGCGGCAAATTGTTTGCAGGAAGCTGGGGCACGTTCAGTTCGTTCGCTC
ACTTTAATTCGTGCATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(78-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

46.512

100

0.485
  comFC/cflB Streptococcus mitis NCTC 12261

36.095

100

0.37
  comFC/cflB Streptococcus pneumoniae Rx1

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae D39

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae R6

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae TIGR4

35.714

100

0.364