Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA33_RS27290 Genome accession   NZ_CP109845
Coordinates   5761234..5761791 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA33     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5756234..5766791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA33_RS27270 (PALA33_05395) pilR 5757510..5758847 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PALA33_RS27275 (PALA33_05396) thiO 5758893..5759987 (-) 1095 WP_023087807.1 glycine oxidase ThiO -
  PALA33_RS27280 (PALA33_05397) - 5760122..5760631 (+) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  PALA33_RS27285 (PALA33_05398) - 5760737..5761243 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PALA33_RS27290 (PALA33_05399) pilV 5761234..5761791 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PALA33_RS27295 (PALA33_05400) pilW 5761788..5762612 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PALA33_RS27300 (PALA33_05401) pilX 5762609..5763196 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PALA33_RS27305 (PALA33_05402) pilY1 5763208..5766699 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=750036 PALA33_RS27290 WP_003119423.1 5761234..5761791(+) (pilV) [Pseudomonas aeruginosa strain PALA33]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=750036 PALA33_RS27290 WP_003119423.1 5761234..5761791(+) (pilV) [Pseudomonas aeruginosa strain PALA33]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995