Detailed information NTG0074942

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AZSP09_RS15135
• Genome accession: NZ_AP021844
• Coordinates: 3220654..3221508 (-)
• Length: 284 a.a.
• NCBI ID: WP_130459326.1
• Uniprot ID: -
• Organism: Azospira sp. I09
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3215654..3226508

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AZSP09_RS15100 (AZSP09_29870)	-	3215986..3216330 (-)	345	WP_152090503.1	hypothetical protein	-
AZSP09_RS15105 (AZSP09_29880)	nudB	3216499..3216966 (-)	468	WP_152090504.1	dihydroneopterin triphosphate diphosphatase	-
AZSP09_RS15110 (AZSP09_29890)	-	3216963..3217409 (-)	447	WP_152090505.1	barstar family protein	-
AZSP09_RS15115 (AZSP09_29900)	-	3217413..3217805 (-)	393	WP_152090506.1	ribonuclease domain-containing protein	-
AZSP09_RS15120 (AZSP09_29910)	aspS	3217821..3219632 (-)	1812	WP_152090507.1	aspartate--tRNA ligase	-
AZSP09_RS15125 (AZSP09_29920)	-	3219663..3220283 (-)	621	WP_043798874.1	DUF502 domain-containing protein	-
AZSP09_RS15130 (AZSP09_29930)	-	3220283..3220555 (-)	273	WP_130459327.1	zinc ribbon domain-containing protein	-
AZSP09_RS15135 (AZSP09_29940)	pilD	3220654..3221508 (-)	855	WP_130459326.1	A24 family peptidase	Machinery gene
AZSP09_RS15140 (AZSP09_29950)	pilC	3221511..3222755 (-)	1245	WP_014236420.1	type II secretion system F family protein	Machinery gene
AZSP09_RS15145 (AZSP09_29960)	pilB	3222780..3224498 (-)	1719	WP_152090508.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AZSP09_RS15150 (AZSP09_29970)	ccsA	3224774..3225613 (-)	840	WP_014236422.1	cytochrome c biogenesis protein CcsA	-

Sequence

Protein

• Length: 284 a.a.
• Molecular weight: 30758.55 Da
• Isoelectric Point: 7.6890

>NTDB_id=74942 AZSP09_RS15135 WP_130459326.1 3220654..3221508(-) (pilD) [Azospira sp. I09]
MEFLLLESPALASAVAGILGLLVGSFLNVVIHRLPRMMERDWHLQCAELRGETAPEKERLSLAAPASRCPHCGHAIRAWE
NIPVLSFLLLKGRCSGCQAPISLRYPLVEAFTGLLSAFTVWHFGPTLAAAAALLLLWAMVALTGIDFDTQLLPDSITLPL
VWLGLLFNISGTFTDISSAVIGAMVGYLSLWSVYWLFKLATGKEGMGYGDFKLLAAIGAWLGWQMLPLTILLSSLVGAVV
GVALIVLARRGRNVPIPFGPYLAAAGLLALYWGQELTQSYLRLL

Nucleotide

• Length: 855 bp

>NTDB_id=74942 AZSP09_RS15135 WP_130459326.1 3220654..3221508(-) (pilD) [Azospira sp. I09]
ATGGAATTTTTACTACTGGAAAGTCCCGCCCTTGCCTCTGCTGTGGCCGGAATCCTGGGCCTCCTGGTCGGCAGCTTCCT
CAACGTCGTCATCCACCGCCTGCCACGGATGATGGAGCGGGACTGGCACCTGCAGTGCGCCGAACTGCGGGGGGAAACGG
CACCGGAAAAAGAACGGCTGAGCCTCGCGGCCCCGGCCTCCCGCTGCCCCCATTGCGGCCACGCCATCCGGGCCTGGGAG
AACATCCCGGTACTCAGCTTCCTGCTCCTCAAAGGCCGCTGTTCCGGTTGCCAGGCCCCGATTTCCCTGCGCTACCCGTT
GGTGGAGGCCTTCACGGGCCTGCTCTCCGCCTTCACGGTATGGCACTTCGGCCCGACCCTGGCAGCGGCTGCCGCCCTGT
TGCTGCTGTGGGCCATGGTGGCCCTGACCGGCATCGACTTCGACACCCAGCTGCTGCCGGACTCCATCACCCTGCCCCTG
GTCTGGCTCGGCCTGCTGTTCAACATCTCCGGCACCTTCACCGACATCAGTTCCGCCGTCATCGGCGCCATGGTCGGCTA
CCTGTCCCTGTGGAGCGTCTACTGGCTGTTCAAGCTGGCCACCGGCAAGGAAGGCATGGGCTACGGCGACTTCAAGCTGC
TGGCGGCCATCGGCGCCTGGCTCGGCTGGCAGATGCTGCCCCTGACCATCCTGCTCTCCTCCCTGGTCGGTGCCGTCGTC
GGCGTGGCCCTGATCGTGCTGGCCCGCCGGGGCCGCAACGTGCCCATTCCCTTCGGTCCCTATCTGGCTGCTGCAGGCCT
GCTGGCCCTGTACTGGGGCCAGGAACTGACCCAGTCCTACCTGCGGCTGCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-123)

• Type IV leader peptidase family (Peptidase_A24) (133-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	54.015	96.479	0.521
pilD	Vibrio cholerae strain A1552	53.623	97.183	0.521
pilD	Acinetobacter nosocomialis M2	53.65	96.479	0.518
pilD	Vibrio campbellii strain DS40M4	52.899	97.183	0.514
pilD	Neisseria gonorrhoeae MS11	49.627	94.366	0.468