Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QBL21_RS20845 Genome accession   NZ_CP123230
Coordinates   4969570..4970613 (-) Length   347 a.a.
NCBI ID   WP_407563748.1    Uniprot ID   -
Organism   Streptomyces sp. 184     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4964570..4975613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL21_RS20825 (QBL21_20810) - 4965141..4965689 (-) 549 WP_407563744.1 adenine phosphoribosyltransferase -
  QBL21_RS20830 (QBL21_20815) secF 4965686..4966888 (-) 1203 WP_407563745.1 protein translocase subunit SecF -
  QBL21_RS20835 (QBL21_20820) secD 4966890..4968656 (-) 1767 WP_407563746.1 protein translocase subunit SecD -
  QBL21_RS20840 (QBL21_20825) yajC 4968817..4969323 (-) 507 WP_407563747.1 preprotein translocase subunit YajC -
  QBL21_RS20845 (QBL21_20830) ruvB 4969570..4970613 (-) 1044 WP_407563748.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QBL21_RS20850 (QBL21_20835) ruvA 4970684..4971307 (-) 624 WP_407563749.1 Holliday junction branch migration protein RuvA -
  QBL21_RS20855 (QBL21_20840) ruvC 4971304..4971972 (-) 669 WP_407563750.1 crossover junction endodeoxyribonuclease RuvC -
  QBL21_RS20860 (QBL21_20845) - 4972096..4972848 (-) 753 WP_407563751.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QBL21_RS20865 (QBL21_20850) pdxT 4972920..4973513 (-) 594 WP_407563752.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  QBL21_RS20870 (QBL21_20855) pdxS 4973525..4974445 (-) 921 WP_407563753.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  QBL21_RS20875 (QBL21_20860) - 4974630..4975184 (-) 555 WP_407563754.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37166.58 Da        Isoelectric Point: 5.1632

>NTDB_id=749386 QBL21_RS20845 WP_407563748.1 4969570..4970613(-) (ruvB) [Streptomyces sp. 184]
MTWEDADPRLVDSAADADDRAVETALRPKDLAEFVGQERVREQLDLVLRAARQRGGAADHVLLSGAPGLGKTTLAMIVAA
EMAAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDELHRMSRPAEEMLYMAMEDLRVDVIVGKGPGATAIPLELPPFTL
VGATTRAGLLPPPLRDRFGFTGHMEFYSPAELERVLHRSAHLLDVAVDAAGAAEIAGRSRGTPRIANRLLRRVRDYAQVK
ADGVITREIAARGLEVYEVDDRGLDRLDRAVLGALLKLFSGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRG
RVATPAAWAHLGLTPPQPGGGMQQTAF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=749386 QBL21_RS20845 WP_407563748.1 4969570..4970613(-) (ruvB) [Streptomyces sp. 184]
ATGACCTGGGAGGACGCCGACCCGCGGCTGGTGGACTCGGCCGCCGACGCCGACGACCGGGCGGTGGAGACCGCGCTGCG
CCCGAAGGACCTGGCGGAGTTCGTCGGCCAGGAGCGCGTGCGCGAGCAGCTCGACCTCGTGCTGCGCGCCGCCCGCCAGC
GCGGCGGCGCCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGCCTCGGCAAGACCACGCTCGCGATGATCGTCGCCGCC
GAGATGGCCGCGCCGATCCGCATCACCTCGGGCCCCGCCATCCAGCACGCCGGCGACCTGGCCGCGATCCTCTCCTCGCT
CCAGGAGGGCGAGGTGCTCTTCCTCGACGAGTTGCACCGCATGTCCCGCCCCGCCGAGGAGATGCTGTACATGGCGATGG
AGGACCTGCGCGTCGACGTCATCGTCGGCAAGGGCCCCGGCGCCACCGCCATCCCGCTGGAGCTGCCCCCCTTCACCCTG
GTCGGCGCCACCACCCGGGCCGGGCTGCTGCCCCCGCCGCTGCGCGACCGCTTCGGCTTCACCGGGCACATGGAGTTCTA
CTCGCCGGCCGAGCTGGAGCGCGTCCTGCACCGCTCCGCGCACCTGCTGGACGTCGCCGTGGACGCCGCCGGCGCAGCCG
AGATCGCCGGCCGCTCCCGCGGCACGCCCCGGATCGCCAACCGCCTGCTGCGCCGGGTGCGGGACTACGCCCAGGTCAAG
GCCGACGGCGTGATCACCCGCGAGATCGCCGCCCGCGGCCTGGAGGTCTACGAGGTCGACGACCGCGGCCTCGACCGCCT
CGACCGCGCCGTCCTCGGCGCCCTGCTGAAGCTCTTCTCCGGCGGCCCCGTCGGGCTTTCCACGCTCGCCGTCGCGGTGG
GGGAGGAACGCGAGACCGTCGAGGAGGTCGCCGAGCCCTTCCTCGTACGCGAAGGGCTGCTGGCCCGCACCCCCCGCGGC
CGCGTCGCCACCCCGGCGGCCTGGGCCCACCTCGGCCTCACGCCCCCGCAGCCCGGCGGCGGCATGCAGCAGACCGCGTT
CTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(187-260)

RuvB C-terminal winged helix domain (WHD_RuvB)

(262-331)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(26-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.172

95.389

0.507
  ruvB Streptococcus pneumoniae TIGR4

51.235

93.372

0.478
  ruvB Streptococcus pneumoniae R6

51.235

93.372

0.478
  ruvB Streptococcus pneumoniae D39

51.235

93.372

0.478
  ruvB Synechocystis sp. PCC 6803

52.532

91.066

0.478
  ruvB Helicobacter pylori 26695

47.385

93.66

0.444