Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OKL56_RS01930 Genome accession   NZ_CP109802
Coordinates   402798..403283 (+) Length   161 a.a.
NCBI ID   WP_002325539.1    Uniprot ID   A0A2X1M1N5
Organism   Enterococcus hirae strain T16-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 397798..408283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKL56_RS01910 (OKL56_01910) - 398837..401041 (+) 2205 WP_128479212.1 type IA DNA topoisomerase -
  OKL56_RS01915 (OKL56_01915) - 401057..401206 (+) 150 WP_164907398.1 hypothetical protein -
  OKL56_RS01920 (OKL56_01920) - 401287..401883 (+) 597 WP_081123836.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
  OKL56_RS01925 (OKL56_01925) - 401896..402795 (+) 900 WP_002322763.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OKL56_RS01930 (OKL56_01930) ssb 402798..403283 (+) 486 WP_002325539.1 single-stranded DNA-binding protein Machinery gene
  OKL56_RS01935 (OKL56_01935) - 403305..403562 (+) 258 WP_010733286.1 hypothetical protein -
  OKL56_RS01940 (OKL56_01940) - 403721..403843 (-) 123 WP_002295624.1 putative holin-like toxin -
  OKL56_RS01945 (OKL56_01945) - 403997..404257 (+) 261 WP_010727923.1 hypothetical protein -
  OKL56_RS01950 (OKL56_01950) - 404705..404911 (+) 207 WP_002296239.1 hypothetical protein -
  OKL56_RS01955 (OKL56_01955) - 404911..405162 (+) 252 WP_002321890.1 hypothetical protein -
  OKL56_RS01960 (OKL56_01960) - 405177..405614 (+) 438 WP_081123822.1 hypothetical protein -
  OKL56_RS01965 (OKL56_01965) - 405607..406314 (+) 708 WP_128479194.1 hypothetical protein -
  OKL56_RS01970 (OKL56_01970) - 406479..406679 (+) 201 WP_081123833.1 hypothetical protein -
  OKL56_RS01975 (OKL56_01975) - 406695..406874 (+) 180 WP_081123834.1 hypothetical protein -
  OKL56_RS01980 (OKL56_01980) - 407033..407275 (-) 243 Protein_383 ATP-binding protein -
  OKL56_RS01985 (OKL56_01985) - 407277..407786 (+) 510 Protein_384 transposase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17575.36 Da        Isoelectric Point: 5.1732

>NTDB_id=749328 OKL56_RS01930 WP_002325539.1 402798..403283(+) (ssb) [Enterococcus hirae strain T16-1]
MINNVTLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQNGNREADFINCVIWRKPAETMATLAKKGSLIGVVGRIQTR
TYDNQQGQRVYVTEVVADNFQLLESKAATESRAHADQSSTSPSTTTFEQRDTATPNNNGLNASQNPFGGQSIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=749328 OKL56_RS01930 WP_002325539.1 402798..403283(+) (ssb) [Enterococcus hirae strain T16-1]
ATGATTAATAATGTGACATTAGTAGGACGCTTAACCAAAGATCCCGATTTACGTTATACTGCAAGTGGCACAGCAGTAGC
GACTTTTACCCTAGCTGTTAACCGCAATTTCACGAATCAAAACGGCAATCGAGAAGCTGATTTTATTAACTGTGTGATTT
GGCGCAAACCAGCAGAAACGATGGCGACATTAGCTAAAAAAGGCAGTTTGATCGGCGTTGTCGGACGGATTCAAACCCGA
ACCTACGATAACCAACAAGGACAACGTGTGTATGTGACAGAAGTTGTGGCCGATAATTTCCAACTATTAGAAAGCAAAGC
AGCGACAGAAAGCCGTGCGCACGCTGATCAATCGTCCACCAGTCCAAGCACCACCACTTTTGAACAACGGGATACAGCGA
CGCCTAACAACAATGGATTGAACGCTTCACAGAATCCATTTGGTGGACAATCAATCGATATTAGCGATGATGATCTACCG
TTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X1M1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.176

100

0.646
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

65.839

0.404
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.786

69.565

0.36