Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AZSP09_RS07865 Genome accession   NZ_AP021844
Coordinates   1707504..1707998 (-) Length   164 a.a.
NCBI ID   WP_014238487.1    Uniprot ID   -
Organism   Azospira sp. I09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1702504..1712998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZSP09_RS07845 (AZSP09_15430) - 1702546..1704717 (+) 2172 WP_152089686.1 methyl-accepting chemotaxis protein -
  AZSP09_RS07850 (AZSP09_15440) - 1704729..1705247 (+) 519 WP_152089687.1 chemotaxis protein CheW -
  AZSP09_RS07855 (AZSP09_15450) - 1705263..1706522 (+) 1260 WP_152089688.1 ATP-binding protein -
  AZSP09_RS07860 (AZSP09_15460) - 1706768..1707400 (+) 633 WP_152089689.1 hypothetical protein -
  AZSP09_RS07865 (AZSP09_15470) ssb 1707504..1707998 (-) 495 WP_014238487.1 single-stranded DNA-binding protein Machinery gene
  AZSP09_RS07870 (AZSP09_15480) - 1708030..1709208 (-) 1179 WP_152090856.1 MFS transporter -
  AZSP09_RS07875 (AZSP09_15490) aspA 1709546..1710964 (+) 1419 WP_152089690.1 aspartate ammonia-lyase -
  AZSP09_RS07880 (AZSP09_15500) - 1711057..1712370 (+) 1314 WP_152089691.1 dicarboxylate/amino acid:cation symporter -
  AZSP09_RS07885 (AZSP09_15510) - 1712391..1712741 (+) 351 WP_152089692.1 GlpM family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17755.70 Da        Isoelectric Point: 5.9731

>NTDB_id=74929 AZSP09_RS07865 WP_014238487.1 1707504..1707998(-) (ssb) [Azospira sp. I09]
MAAVNKVILLGNLGADPETRYMPNGDAVATVRLATTETWKDRNSGEKREATEWHRVVFFRKLAEIVGQYLKKGSSVYIEG
RIRTRKWQDKDGQERYTTEIEATEMQMLGGRGGQGGQGGGSGASYGGGDDFGGGDFSPRSSAPAASAPKKKAPSFDDMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=74929 AZSP09_RS07865 WP_014238487.1 1707504..1707998(-) (ssb) [Azospira sp. I09]
ATGGCTGCAGTCAATAAAGTGATTCTTTTGGGCAATCTGGGGGCCGATCCGGAAACCCGTTACATGCCCAACGGTGACGC
TGTGGCCACTGTCCGCCTGGCTACCACCGAAACCTGGAAGGACCGCAATTCCGGCGAGAAGCGTGAAGCCACCGAATGGC
ACCGGGTGGTGTTCTTCCGCAAGCTGGCCGAGATCGTCGGCCAGTACCTGAAGAAGGGTTCTTCCGTCTATATCGAAGGC
CGCATCCGTACCCGCAAGTGGCAGGACAAGGACGGCCAGGAACGCTACACCACCGAAATCGAAGCCACCGAAATGCAGAT
GCTCGGCGGCCGTGGCGGCCAGGGCGGCCAAGGTGGCGGCAGCGGTGCCTCCTACGGCGGCGGCGACGACTTCGGTGGCG
GCGATTTCAGCCCCCGTTCCTCCGCTCCCGCTGCCTCTGCGCCGAAGAAGAAGGCCCCGTCTTTCGACGACATGGACGAC
GACATTCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.549

100

0.561
  ssb Vibrio cholerae strain A1552

52.601

100

0.555
  ssb Neisseria meningitidis MC58

50.575

100

0.537
  ssb Neisseria gonorrhoeae MS11

49.143

100

0.524

Multiple sequence alignment