Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OCX11_RS06190 Genome accession   NZ_AP024726
Coordinates   1259279..1260052 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 59482     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1254279..1265052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX11_RS06170 trmFO 1254623..1255930 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  OCX11_RS06175 xerC 1256347..1257243 (+) 897 WP_001015602.1 tyrosine recombinase XerC -
  OCX11_RS06180 hslV 1257240..1257785 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  OCX11_RS06185 hslU 1257851..1259254 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  OCX11_RS06190 codY 1259279..1260052 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OCX11_RS06195 - 1260103..1260195 (+) 93 WP_031788481.1 hypothetical protein -
  OCX11_RS06200 rpsB 1260394..1261161 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  OCX11_RS06205 - 1261195..1261308 (+) 114 WP_001789890.1 hypothetical protein -
  OCX11_RS06210 tsf 1261343..1262224 (+) 882 WP_000201387.1 translation elongation factor Ts -
  OCX11_RS06215 pyrH 1262361..1263083 (+) 723 WP_000057330.1 UMP kinase -
  OCX11_RS06220 frr 1263102..1263656 (+) 555 WP_001280006.1 ribosome recycling factor -
  OCX11_RS06225 - 1264029..1264799 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=74929 OCX11_RS06190 WP_000055337.1 1259279..1260052(+) (codY) [Staphylococcus aureus strain 59482]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=74929 OCX11_RS06190 WP_000055337.1 1259279..1260052(+) (codY) [Staphylococcus aureus strain 59482]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATCCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment