Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OHI65_RS15490 Genome accession   NZ_CP109782
Coordinates   1230747..1231265 (+) Length   172 a.a.
NCBI ID   WP_029924876.1    Uniprot ID   A0A011VB38
Organism   Brucella sp. MAB-22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1225747..1236265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHI65_RS15485 (OHI65_15485) uvrA 1226830..1229754 (-) 2925 WP_264359151.1 excinuclease ABC subunit UvrA -
  OHI65_RS15490 (OHI65_15490) ssb 1230747..1231265 (+) 519 WP_029924876.1 single-stranded DNA-binding protein Machinery gene
  OHI65_RS15495 (OHI65_15495) arsC 1231382..1231795 (-) 414 WP_125300264.1 arsenate reductase (glutaredoxin) -
  OHI65_RS15500 (OHI65_15500) phnF 1231863..1232636 (-) 774 WP_115179273.1 phosphonate metabolism transcriptional regulator PhnF -
  OHI65_RS15505 (OHI65_15505) phnG 1232851..1233378 (+) 528 WP_012092084.1 phosphonate C-P lyase system protein PhnG -
  OHI65_RS15510 (OHI65_15510) phnH 1233378..1234007 (+) 630 WP_012092083.1 phosphonate C-P lyase system protein PhnH -
  OHI65_RS15515 (OHI65_15515) - 1234010..1235119 (+) 1110 WP_010660131.1 carbon-phosphorus lyase complex subunit PhnI -
  OHI65_RS15520 (OHI65_15520) - 1235116..1236009 (+) 894 WP_036586757.1 alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18607.33 Da        Isoelectric Point: 5.3476

>NTDB_id=749197 OHI65_RS15490 WP_029924876.1 1230747..1231265(+) (ssb) [Brucella sp. MAB-22]
MAGSVNKVILVGNLGADPEIRRLNSGDVVANLRIATSESWRDRQSGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEVVLQKFRGELQMLDSRGEGGGEGRSFGGGGGNRNQMSDYSGGGGDFGSSGPSNQGGSSG
GFSRDLDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=749197 OHI65_RS15490 WP_029924876.1 1230747..1231265(+) (ssb) [Brucella sp. MAB-22]
ATGGCTGGTAGCGTCAATAAAGTCATTCTGGTCGGCAATCTTGGTGCCGATCCGGAAATTCGTCGTCTGAACTCCGGCGA
CGTGGTTGCCAATCTGCGCATTGCAACGTCGGAAAGCTGGCGCGATCGCCAGAGCGGCGAACGCAAGGACCGCACCGAAT
GGCACAGCGTTGTCATCTTCAATGAGAACCTCGCCAAGGTTGCGGAACAATATCTGAAGAAGGGCGCCAAGGTTTACATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAGAACGGCAATGACCGTTATTCGACGGAAGTCGTGCTGCAGAAGTT
CCGTGGTGAGCTGCAGATGCTCGATAGCCGTGGTGAAGGCGGCGGTGAAGGCCGTTCGTTCGGCGGCGGTGGCGGCAACC
GTAACCAGATGTCTGATTATTCCGGTGGCGGCGGTGATTTCGGCTCGTCTGGCCCATCCAATCAGGGTGGCAGCAGCGGT
GGCTTCTCGCGCGATCTGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A011VB38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.594

100

0.517
  ssb Vibrio cholerae strain A1552

49.714

100

0.506
  ssb Neisseria meningitidis MC58

38.674

100

0.407
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.395