Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   N8A73_RS11215 Genome accession   NZ_CP109651
Coordinates   2198779..2199114 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain LG01     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2193779..2204114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A73_RS11195 gcvT 2194256..2195353 (-) 1098 WP_046311744.1 glycine cleavage system aminomethyltransferase GcvT -
  N8A73_RS11200 - 2195915..2197585 (+) 1671 WP_034280230.1 DEAD/DEAH box helicase -
  N8A73_RS11205 - 2197600..2198397 (+) 798 WP_070326504.1 YqhG family protein -
  N8A73_RS11210 - 2198581..2198745 (+) 165 WP_075623492.1 anti-repressor SinI family protein -
  N8A73_RS11215 sinR 2198779..2199114 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  N8A73_RS11220 tasA 2199182..2199982 (-) 801 WP_176966992.1 biofilm matrix protein TasA -
  N8A73_RS11225 sipW 2200040..2200612 (-) 573 WP_034280218.1 signal peptidase I SipW -
  N8A73_RS11230 tapA 2200665..2201192 (-) 528 WP_041117967.1 amyloid fiber anchoring/assembly protein TapA -
  N8A73_RS11235 - 2201492..2201770 (+) 279 WP_061109527.1 DUF3889 domain-containing protein -
  N8A73_RS11240 - 2201805..2201999 (-) 195 WP_024422974.1 YqzE family protein -
  N8A73_RS11245 - 2202059..2202442 (-) 384 WP_041117969.1 competence type IV pilus minor pilin ComGG -
  N8A73_RS11250 comGF 2202439..2202966 (-) 528 WP_264315971.1 competence type IV pilus minor pilin ComGF -
  N8A73_RS11255 comGE 2202878..2203192 (-) 315 WP_264315972.1 competence type IV pilus minor pilin ComGE -
  N8A73_RS11260 comGD 2203176..2203622 (-) 447 WP_176966991.1 competence type IV pilus minor pilin ComGD -
  N8A73_RS11265 comGC 2203615..2203908 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=748746 N8A73_RS11215 WP_024422969.1 2198779..2199114(+) (sinR) [Bacillus safensis strain LG01]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=748746 N8A73_RS11215 WP_024422969.1 2198779..2199114(+) (sinR) [Bacillus safensis strain LG01]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946