Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QAO39_RS05015 Genome accession   NZ_CP123158
Coordinates   972272..972874 (+) Length   200 a.a.
NCBI ID   WP_165468763.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BE-MSSA9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 967272..977874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO39_RS04980 (QAO39_04980) mreC 967414..968256 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  QAO39_RS04985 (QAO39_04985) mreD 968256..968786 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  QAO39_RS04990 (QAO39_04990) rplU 969079..969387 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  QAO39_RS04995 (QAO39_04995) - 969393..969713 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QAO39_RS05000 (QAO39_05000) rpmA 969725..970009 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  QAO39_RS05005 (QAO39_05005) obgE 970498..971790 (+) 1293 WP_165468764.1 GTPase ObgE -
  QAO39_RS05010 (QAO39_05010) - 971803..972258 (+) 456 WP_000368902.1 ACT domain-containing protein -
  QAO39_RS05015 (QAO39_05015) ruvA 972272..972874 (+) 603 WP_165468763.1 Holliday junction branch migration protein RuvA Machinery gene
  QAO39_RS05020 (QAO39_05020) ruvB 972906..973910 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QAO39_RS05025 (QAO39_05025) queA 973912..974937 (+) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QAO39_RS05030 (QAO39_05030) tgt 974960..976099 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  QAO39_RS05035 (QAO39_05035) yajC 976118..976378 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22274.51 Da        Isoelectric Point: 6.0240

>NTDB_id=748746 QAO39_RS05015 WP_165468763.1 972272..972874(+) (ruvA) [Staphylococcus aureus strain BE-MSSA9]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDAISTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=748746 QAO39_RS05015 WP_165468763.1 972272..972874(+) (ruvA) [Staphylococcus aureus strain BE-MSSA9]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTATTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425