Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   N8A73_RS11030 Genome accession   NZ_CP109651
Coordinates   2166610..2168343 (-) Length   577 a.a.
NCBI ID   WP_034280267.1    Uniprot ID   -
Organism   Bacillus safensis strain LG01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2161610..2173343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A73_RS11015 - 2162487..2163587 (-) 1101 WP_176966999.1 Rap family tetratricopeptide repeat protein -
  N8A73_RS11020 spo0A 2164044..2164847 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  N8A73_RS11025 spoIVB 2165133..2166410 (-) 1278 WP_034280268.1 SpoIVB peptidase -
  N8A73_RS11030 recN 2166610..2168343 (-) 1734 WP_034280267.1 DNA repair protein RecN Machinery gene
  N8A73_RS11035 ahrC 2168377..2168826 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  N8A73_RS11040 - 2168990..2169844 (-) 855 WP_034280266.1 TlyA family RNA methyltransferase -
  N8A73_RS11045 dxs 2169841..2171742 (-) 1902 WP_264315965.1 1-deoxy-D-xylulose-5-phosphate synthase -
  N8A73_RS11050 - 2171893..2172789 (-) 897 WP_198422863.1 polyprenyl synthetase family protein -
  N8A73_RS11055 - 2172773..2173033 (-) 261 WP_176966997.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64725.54 Da        Isoelectric Point: 4.7748

>NTDB_id=748745 N8A73_RS11030 WP_034280267.1 2166610..2168343(-) (recN) [Bacillus safensis strain LG01]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=748745 N8A73_RS11030 WP_034280267.1 2166610..2168343(-) (recN) [Bacillus safensis strain LG01]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTAACGGTTCT
AACGGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGTTCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAAGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATTCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGGGAAGTAGGACGGCTTTTGCTTGATATACATGGACAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGAAATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTCAGGCAGCTGTCTGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCACAATTAGAGCCGGGGGAAGATGAGAGGCTTC
AGGAAGAGCGACATCAAATCAGCAACTACGAAAAAATCTATTCTTCACTCCAAAACGCGTACAACGCTTTGCGTAATGAG
CAAGGAGGACTAGATTGGGTTGGTATGTCCTCAAGCGAGCTTGAGCAGGTGTCTGAAATCAACGATGATTTGAAAAAGTT
ATCTGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACTTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TTGATCCGGCTCGTCTTGATTTTATTGAGTCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCATTTGCAGACGCT
CAAAAATAAATTAGATGCGATGAGCCGTGATGCTCTGCTGGAAGCACTTAACGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCAAAGCAAATTCAAACAGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCATTTGGCAGCACTGATTGTCCGCTATTAGACGGAAAACCTGTCCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCTAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGT
GTCAGCGGCAGAGTGGCACAAGCCATTGCTGAGAAAATTTACAAAGTTGCGTCTGGATCACAAGTGCTCTGTATTACACA
CCTGCCTCAAGTAGCCGCAATGGCTGACACGCATCTCTTCATTTCTAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.91

100

0.759