Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | KUH140013_RS14870 | Genome accession | NZ_AP020324 |
| Coordinates | 2908580..2909050 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain KUN1163 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2896378..2914096 | 2908580..2909050 | within | 0 |
Gene organization within MGE regions
Location: 2896378..2914096
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KUH140013_RS14760 (KUN1163_2747) | - | 2896378..2897415 (-) | 1038 | WP_000857180.1 | tyrosine-type recombinase/integrase | - |
| KUH140013_RS14765 (KUN1163_2748) | - | 2897478..2897720 (-) | 243 | WP_000427213.1 | hypothetical protein | - |
| KUH140013_RS14770 (KUN1163_2749) | - | 2897731..2898714 (-) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| KUH140013_RS14775 (KUN1163_2750) | - | 2898814..2898996 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| KUH140013_RS14780 (KUN1163_2751) | - | 2899200..2899541 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| KUH140013_RS14785 (KUN1163_2752) | - | 2899547..2900479 (-) | 933 | WP_150013986.1 | exonuclease domain-containing protein | - |
| KUH140013_RS14790 (KUN1163_2753) | - | 2900495..2901208 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| KUH140013_RS14795 | - | 2901171..2901345 (+) | 175 | Protein_2827 | transcriptional regulator | - |
| KUH140013_RS14800 (KUN1163_2754) | - | 2901342..2901605 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| KUH140013_RS14805 (KUN1163_2755) | - | 2901621..2901836 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| KUH140013_RS14810 (KUN1163_2756) | - | 2901825..2902154 (-) | 330 | WP_000128909.1 | hypothetical protein | - |
| KUH140013_RS14815 (KUN1163_2757) | - | 2902205..2902957 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| KUH140013_RS14820 (KUN1163_2758) | - | 2902973..2903170 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| KUH140013_RS14825 (KUN1163_2759) | - | 2903157..2903537 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| KUH140013_RS14830 (KUN1163_2760) | - | 2903592..2903915 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| KUH140013_RS14835 (KUN1163_2761) | - | 2903912..2904073 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| KUH140013_RS14840 (KUN1163_2762) | - | 2904168..2904470 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| KUH140013_RS14845 (KUN1163_2763) | - | 2904475..2904735 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| KUH140013_RS14850 (KUN1163_2764) | - | 2904744..2905007 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| KUH140013_RS14855 (KUN1163_2765) | - | 2905016..2906959 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| KUH140013_RS14860 (KUN1163_2766) | - | 2906961..2907881 (+) | 921 | WP_000138478.1 | recombinase RecT | - |
| KUH140013_RS14865 (KUN1163_2767) | - | 2907962..2908579 (+) | 618 | WP_072460574.1 | MBL fold metallo-hydrolase | - |
| KUH140013_RS14870 (KUN1163_2768) | ssbA | 2908580..2909050 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| KUH140013_RS14875 (KUN1163_2769) | - | 2909080..2909973 (+) | 894 | WP_000148333.1 | DnaD domain protein | - |
| KUH140013_RS14880 (KUN1163_2770) | - | 2909980..2910198 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| KUH140013_RS14885 (KUN1163_2771) | - | 2910207..2910611 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| KUH140013_RS14890 (KUN1163_2772) | - | 2910624..2910995 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| KUH140013_RS14895 (KUN1163_2773) | - | 2910995..2911252 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| KUH140013_RS14900 (KUN1163_2774) | - | 2911255..2911497 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| KUH140013_RS14905 (KUN1163_2775) | - | 2911512..2911757 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| KUH140013_RS14910 (KUN1163_2776) | - | 2911754..2912290 (+) | 537 | WP_000185693.1 | dUTPase | - |
| KUH140013_RS14915 (KUN1163_2777) | - | 2912327..2912572 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| KUH140013_RS14920 (KUN1163_2778) | - | 2912569..2912775 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| KUH140013_RS14925 (KUN1163_2779) | rinB | 2912772..2912921 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| KUH140013_RS14930 (KUN1163_2780) | - | 2912921..2913121 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| KUH140013_RS14935 (KUN1163_2781) | - | 2913149..2913565 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| KUH140013_RS14940 (KUN1163_2782) | - | 2913797..2914096 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=74870 KUH140013_RS14870 WP_000934759.1 2908580..2909050(+) (ssbA) [Staphylococcus aureus strain KUN1163]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=74870 KUH140013_RS14870 WP_000934759.1 2908580..2909050(+) (ssbA) [Staphylococcus aureus strain KUN1163]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |