Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OGV21_RS02455 Genome accession   NZ_CP109606
Coordinates   542266..542811 (+) Length   181 a.a.
NCBI ID   WP_003255446.1    Uniprot ID   I7CBQ6
Organism   Pseudomonas putida strain QH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 537266..547811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGV21_RS02440 bfr 537361..537825 (+) 465 WP_003257116.1 bacterioferritin -
  OGV21_RS02445 uvrA 537898..540732 (-) 2835 WP_012270240.1 excinuclease ABC subunit UvrA -
  OGV21_RS02450 - 540862..542256 (+) 1395 WP_012270241.1 MFS transporter -
  OGV21_RS02455 ssb 542266..542811 (+) 546 WP_003255446.1 single-stranded DNA-binding protein Machinery gene
  OGV21_RS02460 fdnG 543143..546211 (+) 3069 WP_156352837.1 formate dehydrogenase-N subunit alpha -
  OGV21_RS02465 fdxH 546211..547161 (+) 951 WP_012270260.1 formate dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20059.16 Da        Isoelectric Point: 5.9286

>NTDB_id=748436 OGV21_RS02455 WP_003255446.1 542266..542811(+) (ssb) [Pseudomonas putida strain QH1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=748436 OGV21_RS02455 WP_003255446.1 542266..542811(+) (ssb) [Pseudomonas putida strain QH1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGTTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGTGACCCCTACAACCAGGGGGGTGGCAACTACGGTG
GCGGCCAACAGCAGCAGTACAACCAGGCTCCGCCTCGTCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCACAGCAGCCTGCACCGCAGCCGGCCGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7CBQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.575
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.497
  ssb Neisseria meningitidis MC58

48.634

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.634

100

0.492