Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OGV19_RS21175 Genome accession   NZ_CP109603
Coordinates   4703477..4704028 (-) Length   183 a.a.
NCBI ID   WP_027594878.1    Uniprot ID   A0A285ZC12
Organism   Pseudomonas putida strain SEH01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4698477..4709028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGV19_RS21150 - 4698512..4699288 (-) 777 WP_264310512.1 SDR family NAD(P)-dependent oxidoreductase -
  OGV19_RS21155 - 4699311..4700096 (-) 786 WP_264310513.1 sulfite exporter TauE/SafE family protein -
  OGV19_RS21160 - 4700128..4701153 (-) 1026 WP_264310514.1 TauD/TfdA family dioxygenase -
  OGV19_RS21165 - 4701595..4702989 (+) 1395 WP_264310515.1 PLP-dependent aminotransferase family protein -
  OGV19_RS21170 - 4703145..4703366 (+) 222 Protein_4176 GlcG/HbpS family heme-binding protein -
  OGV19_RS21175 ssb 4703477..4704028 (-) 552 WP_027594878.1 single-stranded DNA-binding protein Machinery gene
  OGV19_RS21180 - 4704038..4705432 (-) 1395 WP_264310516.1 MFS transporter -
  OGV19_RS21185 uvrA 4705562..4708396 (+) 2835 WP_264310517.1 excinuclease ABC subunit UvrA -
  OGV19_RS21190 bfr 4708466..4708930 (-) 465 WP_264310518.1 bacterioferritin -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20371.43 Da        Isoelectric Point: 5.9312

>NTDB_id=748395 OGV19_RS21175 WP_027594878.1 4703477..4704028(-) (ssb) [Pseudomonas putida strain SEH01]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQNQQGGGDQYNQGGGNNYNQGGQQQQYNQAPPRQQAQRPQQAPQR
PAPQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=748395 OGV19_RS21175 WP_027594878.1 4703477..4704028(-) (ssb) [Pseudomonas putida strain SEH01]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCATCGTCGACATCAACGGCAC
CATGCAACTGCTGGGCGGCCGTCCGCAGAACCAGCAAGGTGGCGGCGACCAGTACAACCAGGGTGGTGGCAACAACTACA
ACCAGGGTGGCCAGCAGCAACAGTACAACCAGGCCCCGCCACGTCAGCAGGCCCAGCGCCCGCAGCAGGCGCCACAGCGT
CCTGCGCCGCAGCAGCCAGCGCCGCAGCCGGCTGCTGACTTTGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A285ZC12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.435

100

0.557
  ssb Glaesserella parasuis strain SC1401

50.267

100

0.514
  ssb Neisseria meningitidis MC58

48.649

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.649

100

0.492