Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | F6Y14_RS14670 | Genome accession | NZ_AP020322 |
| Coordinates | 2870748..2871218 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain KUH180129 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2833995..2876264 | 2870748..2871218 | within | 0 |
Gene organization within MGE regions
Location: 2833995..2876264
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F6Y14_RS14420 (KUH180129_2697) | groES | 2833995..2834279 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| F6Y14_RS14425 (KUH180129_2698) | groL | 2834355..2835971 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| F6Y14_RS14430 (KUH180129_2699) | - | 2836040..2837212 (-) | 1173 | WP_000179343.1 | tyrosine-type recombinase/integrase | - |
| F6Y14_RS14435 (KUH180129_2700) | - | 2837226..2837900 (-) | 675 | WP_000620857.1 | helix-turn-helix transcriptional regulator | - |
| F6Y14_RS14440 (KUH180129_2701) | - | 2838073..2838291 (+) | 219 | WP_000153640.1 | helix-turn-helix domain-containing protein | - |
| F6Y14_RS14445 (KUH180129_2702) | - | 2838296..2838613 (+) | 318 | WP_000481967.1 | helix-turn-helix domain-containing protein | - |
| F6Y14_RS14450 (KUH180129_2703) | - | 2838610..2838756 (+) | 147 | WP_000784885.1 | hypothetical protein | - |
| F6Y14_RS14455 | - | 2838773..2838958 (+) | 186 | WP_223200634.1 | pathogenicity island protein | - |
| F6Y14_RS14460 (KUH180129_2704) | tscT | 2838961..2839287 (+) | 327 | WP_001078344.1 | type II toxin-antitoxin system toxin TscT | - |
| F6Y14_RS14465 (KUH180129_2705) | - | 2839352..2840221 (+) | 870 | WP_001002689.1 | primase alpha helix C-terminal domain-containing protein | - |
| F6Y14_RS14470 (KUH180129_2706) | - | 2840235..2841944 (+) | 1710 | WP_000447473.1 | DUF927 domain-containing protein | - |
| F6Y14_RS14475 (KUH180129_2707) | - | 2842254..2842634 (+) | 381 | WP_000356942.1 | hypothetical protein | - |
| F6Y14_RS14480 (KUH180129_2708) | - | 2842631..2843272 (+) | 642 | WP_001047698.1 | hypothetical protein | - |
| F6Y14_RS14485 (KUH180129_2709) | - | 2843722..2844063 (+) | 342 | WP_001190615.1 | hypothetical protein | - |
| F6Y14_RS14490 (KUH180129_2710) | - | 2844075..2844653 (+) | 579 | WP_000846280.1 | hypothetical protein | - |
| F6Y14_RS14495 (KUH180129_2711) | - | 2844671..2844889 (+) | 219 | WP_000448770.1 | capsid morphogenesis B protein | - |
| F6Y14_RS14500 (KUH180129_2712) | - | 2844940..2845467 (+) | 528 | WP_000771368.1 | spore coat protein | - |
| F6Y14_RS14505 (KUH180129_2713) | - | 2845470..2845811 (+) | 342 | WP_000358774.1 | hypothetical protein | - |
| F6Y14_RS14510 (KUH180129_2714) | - | 2845808..2846377 (+) | 570 | WP_001293088.1 | terminase small subunit | - |
| F6Y14_RS14515 (KUH180129_2715) | tst | 2846532..2847236 (-) | 705 | WP_001035599.1 | toxic shock syndrome toxin TSST-1 | - |
| F6Y14_RS15130 | - | 2847685..2847816 (+) | 132 | WP_256510999.1 | hypothetical protein | - |
| F6Y14_RS14520 (KUH180129_2716) | - | 2848119..2848679 (-) | 561 | WP_001035616.1 | DUF4888 domain-containing protein | - |
| F6Y14_RS14525 (KUH180129_2717) | sec3 | 2849470..2850270 (+) | 801 | WP_000278088.1 | staphylococcal enterotoxin type C3 | - |
| F6Y14_RS14530 (KUH180129_2718) | sel | 2850439..2851137 (-) | 699 | WP_052997930.1 | staphylococcal enterotoxin type L | - |
| F6Y14_RS14540 (KUH180129_2719) | - | 2852179..2853486 (-) | 1308 | WP_150073955.1 | TrkH family potassium uptake protein | - |
| F6Y14_RS14545 (KUH180129_2720) | - | 2853930..2855153 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| F6Y14_RS14550 (KUH180129_2721) | lukH | 2855589..2856644 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| F6Y14_RS14555 (KUH180129_2722) | lukG | 2856666..2857682 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| F6Y14_RS14560 (KUH180129_2723) | sph | 2857920..2858744 (-) | 825 | Protein_2776 | sphingomyelin phosphodiesterase | - |
| F6Y14_RS14565 (KUH180129_2724) | - | 2858801..2859838 (-) | 1038 | WP_000857198.1 | site-specific integrase | - |
| F6Y14_RS14570 (KUH180129_2725) | - | 2860032..2860736 (-) | 705 | WP_000440838.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| F6Y14_RS14575 (KUH180129_2726) | - | 2860876..2861043 (-) | 168 | WP_000705241.1 | hypothetical protein | - |
| F6Y14_RS14580 (KUH180129_2727) | - | 2861113..2861298 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| F6Y14_RS14885 (KUH180129_2728) | - | 2861295..2861441 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| F6Y14_RS14585 (KUH180129_2729) | - | 2861515..2862369 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| F6Y14_RS14590 (KUH180129_2730) | - | 2862381..2863097 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| F6Y14_RS14595 (KUH180129_2731) | - | 2863261..2863503 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| F6Y14_RS14600 (KUH180129_2732) | - | 2863516..2863962 (+) | 447 | WP_000435349.1 | hypothetical protein | - |
| F6Y14_RS14605 (KUH180129_2733) | - | 2863977..2864117 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| F6Y14_RS14610 (KUH180129_2734) | - | 2864110..2864319 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| F6Y14_RS14615 (KUH180129_2735) | - | 2864376..2865125 (+) | 750 | WP_001148587.1 | phage antirepressor KilAC domain-containing protein | - |
| F6Y14_RS14620 (KUH180129_2736) | - | 2865141..2865338 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| F6Y14_RS14625 (KUH180129_2737) | - | 2865325..2865705 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| F6Y14_RS14630 (KUH180129_2738) | - | 2865760..2866083 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| F6Y14_RS14635 (KUH180129_2739) | - | 2866080..2866241 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| F6Y14_RS14640 (KUH180129_2740) | - | 2866336..2866638 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| F6Y14_RS14645 (KUH180129_2741) | - | 2866643..2866903 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| F6Y14_RS14650 (KUH180129_2742) | - | 2866912..2867175 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| F6Y14_RS14655 (KUH180129_2743) | - | 2867184..2869127 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| F6Y14_RS14660 (KUH180129_2744) | - | 2869129..2870049 (+) | 921 | WP_150073956.1 | recombinase RecT | - |
| F6Y14_RS14665 (KUH180129_2745) | - | 2870130..2870747 (+) | 618 | WP_078065370.1 | MBL fold metallo-hydrolase | - |
| F6Y14_RS14670 (KUH180129_2746) | ssbA | 2870748..2871218 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| F6Y14_RS14675 (KUH180129_2747) | - | 2871248..2872141 (+) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| F6Y14_RS14680 (KUH180129_2748) | - | 2872148..2872366 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| F6Y14_RS14685 (KUH180129_2749) | - | 2872375..2872779 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| F6Y14_RS14690 (KUH180129_2750) | - | 2872792..2873163 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| F6Y14_RS14695 (KUH180129_2751) | - | 2873163..2873420 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| F6Y14_RS14700 (KUH180129_2752) | - | 2873423..2873665 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| F6Y14_RS14705 (KUH180129_2753) | - | 2873680..2873925 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| F6Y14_RS14710 (KUH180129_2754) | - | 2873922..2874458 (+) | 537 | WP_000185693.1 | dUTPase | - |
| F6Y14_RS14715 (KUH180129_2755) | - | 2874495..2874740 (+) | 246 | WP_001282071.1 | hypothetical protein | - |
| F6Y14_RS14720 (KUH180129_2756) | - | 2874737..2874943 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| F6Y14_RS14725 (KUH180129_2757) | rinB | 2874940..2875089 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| F6Y14_RS14730 (KUH180129_2758) | - | 2875089..2875289 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| F6Y14_RS14735 (KUH180129_2759) | - | 2875317..2875733 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| F6Y14_RS14740 (KUH180129_2760) | - | 2875965..2876264 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=74826 F6Y14_RS14670 WP_000934759.1 2870748..2871218(+) (ssbA) [Staphylococcus aureus strain KUH180129]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=74826 F6Y14_RS14670 WP_000934759.1 2870748..2871218(+) (ssbA) [Staphylococcus aureus strain KUH180129]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |