Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | F6Y16_RS08590 | Genome accession | NZ_AP020318 |
| Coordinates | 1673665..1674168 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain KUH180038 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1652517..1678231 | 1673665..1674168 | within | 0 |
Gene organization within MGE regions
Location: 1652517..1678231
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F6Y16_RS08420 (KUH180038_1565) | - | 1652517..1652768 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| F6Y16_RS08425 (KUH180038_1566) | - | 1653068..1653331 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| F6Y16_RS08430 (KUH180038_1567) | - | 1653469..1654041 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| F6Y16_RS08435 (KUH180038_1568) | - | 1654222..1654590 (-) | 369 | WP_108932421.1 | YxeA family protein | - |
| F6Y16_RS08440 (KUH180038_1569) | selX | 1654959..1655570 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| F6Y16_RS14605 | - | 1655776..1656477 (+) | 702 | Protein_1585 | tyrosine-type recombinase/integrase | - |
| F6Y16_RS08455 (KUH180038_1571) | - | 1656516..1657454 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| F6Y16_RS08460 (KUH180038_1572) | - | 1658593..1658778 (-) | 186 | WP_001286805.1 | hypothetical protein | - |
| F6Y16_RS08465 (KUH180038_1573) | - | 1658780..1658890 (-) | 111 | WP_000139423.1 | hypothetical protein | - |
| F6Y16_RS08470 (KUH180038_1574) | - | 1658961..1659113 (-) | 153 | WP_001795626.1 | hypothetical protein | - |
| F6Y16_RS14690 | - | 1659356..1659472 (-) | 117 | Protein_1590 | hypothetical protein | - |
| F6Y16_RS08475 (KUH180038_1575) | - | 1659961..1660929 (-) | 969 | WP_000801979.1 | Abi family protein | - |
| F6Y16_RS08485 (KUH180038_1576) | - | 1661206..1661775 (-) | 570 | WP_001293080.1 | terminase small subunit | - |
| F6Y16_RS08490 (KUH180038_1577) | - | 1661772..1662113 (-) | 342 | WP_000358778.1 | hypothetical protein | - |
| F6Y16_RS08495 (KUH180038_1578) | - | 1662116..1662643 (-) | 528 | WP_000771356.1 | spore coat protein | - |
| F6Y16_RS08500 (KUH180038_1579) | - | 1662694..1662912 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| F6Y16_RS08505 (KUH180038_1580) | - | 1662930..1663508 (-) | 579 | WP_000846292.1 | hypothetical protein | - |
| F6Y16_RS08510 (KUH180038_1581) | - | 1663520..1663861 (-) | 342 | WP_001161659.1 | hypothetical protein | - |
| F6Y16_RS08515 (KUH180038_1582) | - | 1664208..1664849 (-) | 642 | WP_001019769.1 | hypothetical protein | - |
| F6Y16_RS08520 (KUH180038_1583) | - | 1664846..1665130 (-) | 285 | WP_000998182.1 | hypothetical protein | - |
| F6Y16_RS08525 (KUH180038_1584) | - | 1665132..1665494 (-) | 363 | WP_108932420.1 | pathogenicity island protein | - |
| F6Y16_RS08535 (KUH180038_1585) | - | 1665780..1667249 (-) | 1470 | WP_001795628.1 | virulence-associated E family protein | - |
| F6Y16_RS08540 (KUH180038_1586) | - | 1667266..1668135 (-) | 870 | WP_001002700.1 | primase alpha helix C-terminal domain-containing protein | - |
| F6Y16_RS08545 (KUH180038_1587) | tscT | 1668199..1668516 (-) | 318 | WP_001103936.1 | type II toxin-antitoxin system toxin TscT | - |
| F6Y16_RS08550 (KUH180038_1588) | tscA | 1668519..1668728 (-) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| F6Y16_RS08555 (KUH180038_1589) | - | 1668721..1668867 (-) | 147 | WP_031824147.1 | hypothetical protein | - |
| F6Y16_RS08560 (KUH180038_1590) | - | 1668879..1669151 (-) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| F6Y16_RS08565 (KUH180038_1591) | - | 1669152..1669364 (-) | 213 | WP_000794656.1 | helix-turn-helix domain-containing protein | - |
| F6Y16_RS08570 (KUH180038_1592) | - | 1669508..1670203 (+) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| F6Y16_RS08575 (KUH180038_1593) | - | 1670659..1671876 (+) | 1218 | WP_000270130.1 | tyrosine-type recombinase/integrase | - |
| F6Y16_RS08580 (KUH180038_1595) | - | 1672359..1673189 (+) | 831 | WP_000357934.1 | KilA-N domain-containing protein | - |
| F6Y16_RS08585 (KUH180038_1596) | rpsR | 1673371..1673613 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| F6Y16_RS08590 (KUH180038_1597) | ssbA | 1673665..1674168 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| F6Y16_RS08595 (KUH180038_1598) | rpsF | 1674189..1674485 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| F6Y16_RS08600 (KUH180038_1599) | - | 1674729..1674920 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| F6Y16_RS08605 (KUH180038_1600) | ychF | 1675006..1676103 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| F6Y16_RS08610 (KUH180038_1601) | - | 1676115..1676318 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| F6Y16_RS08615 (KUH180038_1602) | - | 1676348..1677229 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| F6Y16_RS08620 (KUH180038_1603) | - | 1677386..1678231 (-) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=74730 F6Y16_RS08590 WP_000934799.1 1673665..1674168(-) (ssbA) [Staphylococcus aureus strain KUH180038]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=74730 F6Y16_RS08590 WP_000934799.1 1673665..1674168(-) (ssbA) [Staphylococcus aureus strain KUH180038]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |