Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QAY62_RS02060 Genome accession   NZ_CP123097
Coordinates   376583..377587 (+) Length   334 a.a.
NCBI ID   WP_102695862.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA-ATCC43300     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 371583..382587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY62_RS02025 (QAY62_02010) mreD 371935..372465 (+) 531 WP_001259929.1 rod shape-determining protein MreD -
  QAY62_RS02030 (QAY62_02015) rplU 372758..373066 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  QAY62_RS02035 (QAY62_02020) - 373072..373392 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QAY62_RS02040 (QAY62_02025) rpmA 373404..373688 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  QAY62_RS02045 (QAY62_02030) obgE 374175..375467 (+) 1293 WP_102695864.1 GTPase ObgE -
  QAY62_RS02050 (QAY62_02035) - 375480..375935 (+) 456 WP_102695863.1 ACT domain-containing protein -
  QAY62_RS02055 (QAY62_02040) ruvA 375949..376551 (+) 603 WP_000271546.1 Holliday junction branch migration protein RuvA Machinery gene
  QAY62_RS02060 (QAY62_02045) ruvB 376583..377587 (+) 1005 WP_102695862.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QAY62_RS02065 (QAY62_02050) queA 377589..378614 (+) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QAY62_RS02070 (QAY62_02055) tgt 378637..379776 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  QAY62_RS02075 (QAY62_02060) yajC 379795..380055 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37732.03 Da        Isoelectric Point: 5.0865

>NTDB_id=746523 QAY62_RS02060 WP_102695862.1 376583..377587(+) (ruvB) [Staphylococcus aureus strain MRSA-ATCC43300]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIAEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=746523 QAY62_RS02060 WP_102695862.1 376583..377587(+) (ruvB) [Staphylococcus aureus strain MRSA-ATCC43300]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGGCTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGCTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACA
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCCAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGCCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCGCGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.644

97.605

0.641
  ruvB Streptococcus pneumoniae TIGR4

58.485

98.802

0.578
  ruvB Streptococcus pneumoniae R6

58.182

98.802

0.575
  ruvB Streptococcus pneumoniae D39

58.182

98.802

0.575
  ruvB Helicobacter pylori 26695

56.481

97.006

0.548
  ruvB Synechocystis sp. PCC 6803

53.438

95.808

0.512