Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | F6Y15_RS08600 | Genome accession | NZ_AP020313 |
| Coordinates | 1675255..1675758 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain KUH140046 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1654107..1679821 | 1675255..1675758 | within | 0 |
Gene organization within MGE regions
Location: 1654107..1679821
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F6Y15_RS08430 (KUH140046_1565) | - | 1654107..1654358 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| F6Y15_RS08435 (KUH140046_1566) | - | 1654658..1654921 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| F6Y15_RS08440 (KUH140046_1567) | - | 1655059..1655631 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| F6Y15_RS08445 (KUH140046_1568) | - | 1655812..1656180 (-) | 369 | WP_108932421.1 | YxeA family protein | - |
| F6Y15_RS08450 (KUH140046_1569) | selX | 1656549..1657160 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| F6Y15_RS14635 | - | 1657366..1658067 (+) | 702 | Protein_1587 | tyrosine-type recombinase/integrase | - |
| F6Y15_RS08465 (KUH140046_1571) | - | 1658106..1659044 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| F6Y15_RS08470 (KUH140046_1572) | - | 1660183..1660368 (-) | 186 | WP_001286805.1 | hypothetical protein | - |
| F6Y15_RS08475 (KUH140046_1573) | - | 1660370..1660480 (-) | 111 | WP_000139423.1 | hypothetical protein | - |
| F6Y15_RS08480 (KUH140046_1574) | - | 1660551..1660703 (-) | 153 | WP_001795626.1 | hypothetical protein | - |
| F6Y15_RS14725 | - | 1660946..1661062 (-) | 117 | Protein_1592 | hypothetical protein | - |
| F6Y15_RS08485 (KUH140046_1575) | - | 1661551..1662519 (-) | 969 | WP_000801979.1 | Abi family protein | - |
| F6Y15_RS08495 (KUH140046_1576) | - | 1662796..1663365 (-) | 570 | WP_001293080.1 | terminase small subunit | - |
| F6Y15_RS08500 (KUH140046_1577) | - | 1663362..1663703 (-) | 342 | WP_000358778.1 | hypothetical protein | - |
| F6Y15_RS08505 (KUH140046_1578) | - | 1663706..1664233 (-) | 528 | WP_000771356.1 | spore coat protein | - |
| F6Y15_RS08510 (KUH140046_1579) | - | 1664284..1664502 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| F6Y15_RS08515 (KUH140046_1580) | - | 1664520..1665098 (-) | 579 | WP_000846292.1 | hypothetical protein | - |
| F6Y15_RS08520 (KUH140046_1581) | - | 1665110..1665451 (-) | 342 | WP_001161659.1 | hypothetical protein | - |
| F6Y15_RS08525 (KUH140046_1582) | - | 1665798..1666439 (-) | 642 | WP_001019769.1 | hypothetical protein | - |
| F6Y15_RS08530 (KUH140046_1583) | - | 1666436..1666720 (-) | 285 | WP_000998182.1 | hypothetical protein | - |
| F6Y15_RS08535 (KUH140046_1584) | - | 1666722..1667084 (-) | 363 | WP_108932420.1 | pathogenicity island protein | - |
| F6Y15_RS08545 (KUH140046_1585) | - | 1667370..1668839 (-) | 1470 | WP_150060324.1 | virulence-associated E family protein | - |
| F6Y15_RS08550 | - | 1668856..1669725 (-) | 870 | Protein_1604 | primase alpha helix C-terminal domain-containing protein | - |
| F6Y15_RS08555 (KUH140046_1588) | tscT | 1669789..1670106 (-) | 318 | WP_001103936.1 | type II toxin-antitoxin system toxin TscT | - |
| F6Y15_RS08560 (KUH140046_1589) | tscA | 1670109..1670318 (-) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| F6Y15_RS08565 (KUH140046_1590) | - | 1670311..1670457 (-) | 147 | WP_031824147.1 | hypothetical protein | - |
| F6Y15_RS08570 (KUH140046_1591) | - | 1670469..1670741 (-) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| F6Y15_RS08575 (KUH140046_1592) | - | 1670742..1670954 (-) | 213 | WP_000794656.1 | helix-turn-helix domain-containing protein | - |
| F6Y15_RS08580 (KUH140046_1593) | - | 1671098..1671793 (+) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| F6Y15_RS08585 (KUH140046_1594) | - | 1672249..1673466 (+) | 1218 | WP_000270130.1 | tyrosine-type recombinase/integrase | - |
| F6Y15_RS08590 (KUH140046_1596) | - | 1673949..1674779 (+) | 831 | WP_000357934.1 | KilA-N domain-containing protein | - |
| F6Y15_RS08595 (KUH140046_1597) | rpsR | 1674961..1675203 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| F6Y15_RS08600 (KUH140046_1598) | ssbA | 1675255..1675758 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| F6Y15_RS08605 (KUH140046_1599) | rpsF | 1675779..1676075 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| F6Y15_RS08610 (KUH140046_1600) | - | 1676319..1676510 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| F6Y15_RS08615 (KUH140046_1601) | ychF | 1676596..1677693 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| F6Y15_RS08620 (KUH140046_1602) | - | 1677705..1677908 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| F6Y15_RS08625 (KUH140046_1603) | - | 1677938..1678819 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| F6Y15_RS08630 (KUH140046_1604) | - | 1678976..1679821 (-) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=74644 F6Y15_RS08600 WP_000934799.1 1675255..1675758(-) (ssbA) [Staphylococcus aureus strain KUH140046]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=74644 F6Y15_RS08600 WP_000934799.1 1675255..1675758(-) (ssbA) [Staphylococcus aureus strain KUH140046]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |