Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | F6Y13_RS08515 | Genome accession | NZ_AP020311 |
| Coordinates | 1655133..1655636 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain KUH140013 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1633913..1659699 | 1655133..1655636 | within | 0 |
Gene organization within MGE regions
Location: 1633913..1659699
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F6Y13_RS08345 (KUH140013_1548) | - | 1633913..1634164 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| F6Y13_RS08350 (KUH140013_1549) | - | 1634464..1634727 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| F6Y13_RS08355 (KUH140013_1550) | - | 1634865..1635437 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| F6Y13_RS08360 (KUH140013_1551) | - | 1635618..1635986 (-) | 369 | WP_000849177.1 | YxeA family protein | - |
| F6Y13_RS08365 (KUH140013_1552) | selX | 1636355..1636966 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| F6Y13_RS14505 | - | 1637172..1637873 (+) | 702 | Protein_1570 | tyrosine-type recombinase/integrase | - |
| F6Y13_RS08380 (KUH140013_1555) | - | 1637912..1638849 (+) | 938 | Protein_1571 | Abi family protein | - |
| F6Y13_RS08385 (KUH140013_1556) | - | 1639988..1640173 (-) | 186 | WP_001286805.1 | hypothetical protein | - |
| F6Y13_RS08390 (KUH140013_1557) | - | 1640175..1640285 (-) | 111 | WP_000139423.1 | hypothetical protein | - |
| F6Y13_RS08395 (KUH140013_1558) | - | 1640356..1640508 (-) | 153 | WP_001795626.1 | hypothetical protein | - |
| F6Y13_RS14585 | - | 1640751..1640867 (-) | 117 | Protein_1575 | hypothetical protein | - |
| F6Y13_RS08400 (KUH140013_1559) | - | 1641356..1642324 (-) | 969 | WP_000801979.1 | Abi family protein | - |
| F6Y13_RS08410 (KUH140013_1560) | - | 1642601..1643170 (-) | 570 | WP_096391854.1 | terminase small subunit | - |
| F6Y13_RS08415 (KUH140013_1561) | - | 1643167..1643508 (-) | 342 | WP_000358778.1 | hypothetical protein | - |
| F6Y13_RS08420 (KUH140013_1562) | - | 1643511..1644038 (-) | 528 | WP_000771356.1 | spore coat protein | - |
| F6Y13_RS08425 (KUH140013_1563) | - | 1644089..1644307 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| F6Y13_RS08430 (KUH140013_1564) | - | 1644325..1644903 (-) | 579 | WP_000846292.1 | hypothetical protein | - |
| F6Y13_RS08435 (KUH140013_1565) | - | 1644915..1645256 (-) | 342 | WP_001161659.1 | hypothetical protein | - |
| F6Y13_RS08440 (KUH140013_1566) | - | 1645603..1646244 (-) | 642 | WP_001019770.1 | hypothetical protein | - |
| F6Y13_RS08445 (KUH140013_1567) | - | 1646246..1646518 (-) | 273 | WP_001149387.1 | hypothetical protein | - |
| F6Y13_RS08450 (KUH140013_1568) | - | 1646505..1647308 (-) | 804 | WP_000148371.1 | bifunctional DNA primase/polymerase | - |
| F6Y13_RS08455 (KUH140013_1569) | - | 1647479..1649092 (-) | 1614 | WP_033854769.1 | hypothetical protein | - |
| F6Y13_RS08460 (KUH140013_1570) | tscT | 1649167..1649466 (-) | 300 | WP_031904328.1 | type II toxin-antitoxin system toxin TscT | - |
| F6Y13_RS08465 (KUH140013_1571) | tscA | 1649469..1649678 (-) | 210 | WP_001060744.1 | type II toxin-antitoxin system antitoxin TscA | - |
| F6Y13_RS08470 (KUH140013_1572) | - | 1649671..1649817 (-) | 147 | WP_000784888.1 | hypothetical protein | - |
| F6Y13_RS08475 (KUH140013_1573) | - | 1649829..1650101 (-) | 273 | WP_001663084.1 | hypothetical protein | - |
| F6Y13_RS08480 (KUH140013_1574) | - | 1650134..1650313 (-) | 180 | WP_052999119.1 | hypothetical protein | - |
| F6Y13_RS08485 (KUH140013_1575) | - | 1650482..1651186 (+) | 705 | WP_223200752.1 | helix-turn-helix domain-containing protein | - |
| F6Y13_RS08490 (KUH140013_1576) | - | 1651312..1651833 (+) | 522 | WP_001101554.1 | hypothetical protein | - |
| F6Y13_RS08500 (KUH140013_1577) | - | 1652127..1653344 (+) | 1218 | WP_000270122.1 | tyrosine-type recombinase/integrase | - |
| F6Y13_RS08505 (KUH140013_1579) | - | 1653827..1654657 (+) | 831 | Protein_1595 | KilA-N domain-containing protein | - |
| F6Y13_RS08510 (KUH140013_1580) | rpsR | 1654839..1655081 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| F6Y13_RS08515 (KUH140013_1581) | ssbA | 1655133..1655636 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| F6Y13_RS08520 (KUH140013_1582) | rpsF | 1655657..1655953 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| F6Y13_RS08525 (KUH140013_1583) | - | 1656197..1656388 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| F6Y13_RS08530 (KUH140013_1584) | ychF | 1656474..1657571 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| F6Y13_RS08535 (KUH140013_1585) | - | 1657583..1657786 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| F6Y13_RS08540 (KUH140013_1586) | - | 1657816..1658697 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| F6Y13_RS08545 (KUH140013_1587) | - | 1658854..1659699 (-) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=74600 F6Y13_RS08515 WP_000934799.1 1655133..1655636(-) (ssbA) [Staphylococcus aureus strain KUH140013]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=74600 F6Y13_RS08515 WP_000934799.1 1655133..1655636(-) (ssbA) [Staphylococcus aureus strain KUH140013]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |