Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   F6Y13_RS08515 Genome accession   NZ_AP020311
Coordinates   1655133..1655636 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain KUH140013     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1650133..1660636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6Y13_RS08480 (KUH140013_1574) - 1650134..1650313 (-) 180 WP_052999119.1 hypothetical protein -
  F6Y13_RS08485 (KUH140013_1575) - 1650482..1651186 (+) 705 WP_223200752.1 helix-turn-helix domain-containing protein -
  F6Y13_RS08490 (KUH140013_1576) - 1651312..1651833 (+) 522 WP_001101554.1 hypothetical protein -
  F6Y13_RS08500 (KUH140013_1577) - 1652127..1653344 (+) 1218 WP_000270122.1 tyrosine-type recombinase/integrase -
  F6Y13_RS08505 (KUH140013_1579) - 1653827..1654657 (+) 831 Protein_1595 KilA-N domain-containing protein -
  F6Y13_RS08510 (KUH140013_1580) rpsR 1654839..1655081 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  F6Y13_RS08515 (KUH140013_1581) ssbA 1655133..1655636 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  F6Y13_RS08520 (KUH140013_1582) rpsF 1655657..1655953 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  F6Y13_RS08525 (KUH140013_1583) - 1656197..1656388 (+) 192 WP_001052483.1 hypothetical protein -
  F6Y13_RS08530 (KUH140013_1584) ychF 1656474..1657571 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  F6Y13_RS08535 (KUH140013_1585) - 1657583..1657786 (-) 204 WP_000157345.1 DUF951 domain-containing protein -
  F6Y13_RS08540 (KUH140013_1586) - 1657816..1658697 (-) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  F6Y13_RS08545 (KUH140013_1587) - 1658854..1659699 (-) 846 WP_001550052.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=74600 F6Y13_RS08515 WP_000934799.1 1655133..1655636(-) (ssbA) [Staphylococcus aureus strain KUH140013]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=74600 F6Y13_RS08515 WP_000934799.1 1655133..1655636(-) (ssbA) [Staphylococcus aureus strain KUH140013]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment