Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SAGCMC97051_RS09535 Genome accession   NZ_AP020310
Coordinates   1833528..1834019 (-) Length   163 a.a.
NCBI ID   WP_050197274.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GCMC97051     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1828528..1839019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAGCMC97051_RS09520 (SAGCMC97051_18070) - 1831446..1832105 (-) 660 WP_050197276.1 DUF1129 domain-containing protein -
  SAGCMC97051_RS09525 (SAGCMC97051_18080) - 1832130..1833074 (-) 945 WP_050197275.1 magnesium transporter CorA family protein -
  SAGCMC97051_RS09530 (SAGCMC97051_18090) rpsR 1833244..1833483 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  SAGCMC97051_RS09535 (SAGCMC97051_18100) ssbA 1833528..1834019 (-) 492 WP_050197274.1 single-stranded DNA-binding protein Machinery gene
  SAGCMC97051_RS09540 (SAGCMC97051_18110) rpsF 1834031..1834318 (-) 288 WP_001151773.1 30S ribosomal protein S6 -
  SAGCMC97051_RS09545 (SAGCMC97051_18120) mutY 1835381..1836535 (+) 1155 WP_161546180.1 A/G-specific adenine glycosylase -
  SAGCMC97051_RS09550 (SAGCMC97051_18130) - 1836712..1837305 (+) 594 WP_000402394.1 helix-turn-helix domain-containing protein -
  SAGCMC97051_RS09555 (SAGCMC97051_18140) trxA 1837351..1837683 (-) 333 WP_001932060.1 thioredoxin -
  SAGCMC97051_RS09560 (SAGCMC97051_18150) - 1837746..1838246 (-) 501 WP_000446812.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18223.85 Da        Isoelectric Point: 4.7294

>NTDB_id=74562 SAGCMC97051_RS09535 WP_050197274.1 1833528..1834019(-) (ssbA) [Streptococcus agalactiae strain GCMC97051]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGDYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=74562 SAGCMC97051_RS09535 WP_050197274.1 1833528..1834019(-) (ssbA) [Streptococcus agalactiae strain GCMC97051]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGACTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.714

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

59.064

100

0.62
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.871

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment