Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBD03_RS00040 Genome accession   NZ_CP122959
Coordinates   9474..9986 (+) Length   170 a.a.
NCBI ID   WP_011373726.1    Uniprot ID   Q38ZR7
Organism   Latilactobacillus sakei strain HUP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4474..14986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS00030 (QBD03_00030) gyrA 6329..8902 (+) 2574 WP_280102891.1 DNA gyrase subunit A -
  QBD03_RS00035 (QBD03_00035) rpsF 9139..9435 (+) 297 WP_011373725.1 30S ribosomal protein S6 -
  QBD03_RS00040 (QBD03_00040) ssb 9474..9986 (+) 513 WP_011373726.1 single-stranded DNA-binding protein Machinery gene
  QBD03_RS00045 (QBD03_00045) rpsR 10017..10256 (+) 240 WP_004265822.1 30S ribosomal protein S18 -
  QBD03_RS00050 (QBD03_00050) - 10474..12507 (+) 2034 WP_016264315.1 DHH family phosphoesterase -
  QBD03_RS00055 (QBD03_00055) rplI 12528..12980 (+) 453 WP_011373728.1 50S ribosomal protein L9 -
  QBD03_RS00060 (QBD03_00060) dnaB 13114..14508 (+) 1395 WP_172425613.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18610.19 Da        Isoelectric Point: 4.6856

>NTDB_id=744589 QBD03_RS00040 WP_011373726.1 9474..9986(+) (ssb) [Latilactobacillus sakei strain HUP1]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSMAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQTGNAPAANNTQADPFANNGQA
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=744589 QBD03_RS00040 WP_011373726.1 9474..9986(+) (ssb) [Latilactobacillus sakei strain HUP1]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCAGTTGG
GACTTTCTCAATGGCAGTTAACCGTCAATTCACGAACGCTAACGGCGATCGTGAAGCAGACTTTATTAATTGTGTCATTT
GGCGTAAATCAGCGGAAAATTTCGCTAACTTTACTAAAAAGGGCTCATTAGTAGGGGTTGATGGCCGTCTACAAACTAGA
AATTATGAAAATCAACAAGGTCAACGTGTCTACGTGACTGAAGTGGTTGTCGATAATTTCTCATTGTTAGAATCACGGAC
AACAACAGAGCAACGGCAAGGTGATGGCGCAAGTCAGAACTTTAATAGTAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAAACGGGTAACGCACCAGCCGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCG
ATTGATATTTCGGATGATGACTTACCTTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38ZR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

56

100

0.576
  ssb Glaesserella parasuis strain SC1401

33.69

100

0.371
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.353

0.371