Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QAP03_RS02660 Genome accession   NZ_CP122955
Coordinates   552797..553807 (-) Length   336 a.a.
NCBI ID   WP_050824033.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS27-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 547797..558807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP03_RS02615 (QAP03_02610) - 547894..548268 (-) 375 WP_000772151.1 chemotaxis response regulator CheY -
  QAP03_RS02620 (QAP03_02615) - 548588..549160 (+) 573 WP_227986160.1 outer membrane protein -
  QAP03_RS02630 (QAP03_02625) - 549292..549699 (-) 408 WP_286490925.1 hypothetical protein -
  QAP03_RS02635 (QAP03_02630) - 549702..549944 (-) 243 WP_180612204.1 PP0621 family protein -
  QAP03_RS02640 (QAP03_02635) rsmG 549938..550474 (-) 537 WP_001068845.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QAP03_RS02645 (QAP03_02640) queA 550471..551508 (-) 1038 WP_286490922.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QAP03_RS02650 (QAP03_02645) tatC 551509..552255 (-) 747 WP_108528993.1 twin-arginine translocase subunit TatC -
  QAP03_RS02655 (QAP03_02650) tatB 552248..552730 (-) 483 WP_286490901.1 Sec-independent protein translocase protein TatB -
  QAP03_RS02660 (QAP03_02655) ruvB 552797..553807 (-) 1011 WP_050824033.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QAP03_RS02665 (QAP03_02660) panB 553808..554620 (-) 813 WP_286490882.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  QAP03_RS02670 (QAP03_02665) - 554770..555492 (+) 723 WP_100978180.1 hypothetical protein -
  QAP03_RS02675 (QAP03_02670) - 555482..556309 (+) 828 WP_286490875.1 outer membrane beta-barrel protein -
  QAP03_RS02680 (QAP03_02675) - 556318..557262 (+) 945 WP_286490873.1 outer membrane beta-barrel protein -
  QAP03_RS02685 (QAP03_02680) - 557272..558594 (+) 1323 WP_286490869.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37329.36 Da        Isoelectric Point: 6.2626

>NTDB_id=744524 QAP03_RS02660 WP_050824033.1 552797..553807(-) (ruvB) [Helicobacter pylori strain BS27-2]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLHQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLDITLHALKELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=744524 QAP03_RS02660 WP_050824033.1 552797..553807(-) (ruvB) [Helicobacter pylori strain BS27-2]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGTCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACTCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCTCTCATCATTAAAAAAGCCGCCGCCAAACTCCATCAAGACATCAAAGAAGAAAGTGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAGACATCACTTTGCATGCTTTGAAGGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGGCGACCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.024

100

0.97
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.87

96.131

0.518
  ruvB Streptococcus pneumoniae TIGR4

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae R6

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae D39

50.464

96.131

0.485
  ruvB Synechocystis sp. PCC 6803

50.789

94.345

0.479