Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | QAP06_RS05530 | Genome accession | NZ_CP122954 |
| Coordinates | 1165542..1166552 (+) | Length | 336 a.a. |
| NCBI ID | WP_000664489.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BS06 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1160542..1171552
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAP06_RS05505 (QAP06_05505) | - | 1160741..1162063 (-) | 1323 | WP_286465318.1 | M23 family metallopeptidase | - |
| QAP06_RS05510 (QAP06_05510) | - | 1162073..1163017 (-) | 945 | WP_286465321.1 | outer membrane beta-barrel protein | - |
| QAP06_RS05515 (QAP06_05515) | - | 1163026..1163868 (-) | 843 | WP_286465323.1 | outer membrane beta-barrel protein | - |
| QAP06_RS05520 (QAP06_05520) | - | 1163858..1164580 (-) | 723 | WP_121100754.1 | hypothetical protein | - |
| QAP06_RS05525 (QAP06_05525) | panB | 1164729..1165541 (+) | 813 | WP_140528355.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| QAP06_RS05530 (QAP06_05530) | ruvB | 1165542..1166552 (+) | 1011 | WP_000664489.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| QAP06_RS05535 (QAP06_05535) | tatB | 1166620..1167102 (+) | 483 | WP_286465335.1 | Sec-independent protein translocase protein TatB | - |
| QAP06_RS05540 (QAP06_05540) | tatC | 1167095..1167841 (+) | 747 | WP_120936260.1 | twin-arginine translocase subunit TatC | - |
| QAP06_RS05545 (QAP06_05545) | queA | 1167842..1168879 (+) | 1038 | WP_286465337.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| QAP06_RS05550 (QAP06_05550) | rsmG | 1168876..1169412 (+) | 537 | WP_286465338.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| QAP06_RS05555 (QAP06_05555) | - | 1169406..1169636 (+) | 231 | WP_000944428.1 | PP0621 family protein | - |
| QAP06_RS05560 (QAP06_05560) | - | 1169639..1170046 (+) | 408 | WP_180665649.1 | hypothetical protein | - |
| QAP06_RS05570 (QAP06_05570) | - | 1170179..1170781 (-) | 603 | WP_000291621.1 | outer membrane protein | - |
| QAP06_RS05575 (QAP06_05575) | - | 1171072..1171446 (+) | 375 | WP_000772148.1 | chemotaxis response regulator CheY | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37323.36 Da Isoelectric Point: 6.3684
>NTDB_id=744482 QAP06_RS05530 WP_000664489.1 1165542..1166552(+) (ruvB) [Helicobacter pylori strain BS06]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLKSQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLKSQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=744482 QAP06_RS05530 WP_000664489.1 1165542..1166552(+) (ruvB) [Helicobacter pylori strain BS06]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCCAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAGATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTTTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTCATCATCAAAAAAGCCGCCGTTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GCAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCCTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTGGGCTTTGATGAGGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGGCCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAAGTCTCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCCAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAGATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTTTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTCATCATCAAAAAAGCCGCCGTTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GCAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCCTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTGGGCTTTGATGAGGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGGCCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAAGTCTCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.619 |
100 |
0.976 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
52.475 |
90.179 |
0.473 |