NTDB

Overview

Name	ruvB	Type	Machinery gene
Locus tag	PH204_RS04920	Genome accession	NZ_CP122953
Coordinates	1046868..1047878 (+)	Length	336 a.a.
NCBI ID	WP_286446604.1	Uniprot ID	-
Organism	Helicobacter pylori strain BS30
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1041868..1052878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PH204_RS04895 (PH204_04895)	-	1042067..1043389 (-)	1323	WP_286446596.1	M23 family metallopeptidase	-
PH204_RS04900 (PH204_04900)	-	1043399..1044343 (-)	945	WP_286446598.1	outer membrane beta-barrel protein	-
PH204_RS04905 (PH204_04905)	-	1044352..1045194 (-)	843	WP_286446600.1	outer membrane beta-barrel protein	-
PH204_RS04910 (PH204_04910)	-	1045184..1045906 (-)	723	WP_140565055.1	hypothetical protein	-
PH204_RS04915 (PH204_04915)	panB	1046055..1046867 (+)	813	WP_286446603.1	3-methyl-2-oxobutanoate hydroxymethyltransferase	-
PH204_RS04920 (PH204_04920)	ruvB	1046868..1047878 (+)	1011	WP_286446604.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
PH204_RS04925 (PH204_04925)	tatB	1047946..1048458 (+)	513	WP_286446605.1	Sec-independent protein translocase protein TatB	-
PH204_RS04930 (PH204_04930)	tatC	1048451..1049200 (+)	750	WP_286446607.1	twin-arginine translocase subunit TatC	-
PH204_RS04935 (PH204_04935)	queA	1049201..1050238 (+)	1038	WP_286446608.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
PH204_RS04940 (PH204_04940)	rsmG	1050235..1050771 (+)	537	WP_050825464.1	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	-
PH204_RS04945 (PH204_04945)	-	1050765..1051007 (+)	243	WP_000944423.1	PP0621 family protein	-
PH204_RS04950 (PH204_04950)	-	1051010..1051417 (+)	408	WP_286446612.1	hypothetical protein	-
PH204_RS04960 (PH204_04960)	-	1051549..1052151 (-)	603	WP_000291623.1	outer membrane protein	-
PH204_RS04965 (PH204_04965)	-	1052441..1052815 (+)	375	WP_000772148.1	chemotaxis response regulator CheY	-

Sequence

Protein

Download Length: 336 a.a. Molecular weight: 37335.37 Da Isoelectric Point: 6.3684

                                >NTDB_id=744441 PH204_RS04920 WP_286446604.1 1046868..1047878(+) (ruvB) [Helicobacter pylori strain BS30]

MKERIVNLESLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN

IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT

RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM

DLNITLHALKELGVNELGFDESDLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK

THVLLKIPTLNPQTLF

Nucleotide

Download Length: 1011 bp

                                >NTDB_id=744441 PH204_RS04920 WP_286446604.1 1046868..1047878(+) (ruvB) [Helicobacter pylori strain BS30]

ATGAAAGAACGGATAGTCAATTTAGAAAGTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA

AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG

ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT

ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCTATTTTGACGAATTTGCAGGCTAAAGACAT

TCTTTTTATTGATGAAATCCACCGACTCAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGACTGG

ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACC

AGAGCCGGAATGCTCTCCAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT

GGCTCTCATCATTAAAAAAGCCGCCGCTAAACTCAATCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA

GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG

GATTTAAACATCACTTTGCATGCTTTGAAGGAATTAGGCGTGAATGAATTAGGCTTTGATGAATCGGATTTGGCGTATTT

ATCTTTGTTGGCTAACGCTCAAGGGCGACCGGTAGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA

TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA

ACCCATGTGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvB	Helicobacter pylori 26695	97.024	100	0.97
ruvB	Bacillus subtilis subsp. subtilis str. 168	53.56	96.131	0.515
ruvB	Synechocystis sp. PCC 6803	51.582	94.048	0.485
ruvB	Streptococcus pneumoniae TIGR4	50.625	95.238	0.482
ruvB	Streptococcus pneumoniae R6	50.625	95.238	0.482
ruvB	Streptococcus pneumoniae D39	50.625	95.238	0.482

Detailed information NTG0744441