Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | QAD59_RS05290 | Genome accession | NZ_CP122951 |
| Coordinates | 1101621..1102631 (+) | Length | 336 a.a. |
| NCBI ID | WP_001928060.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BS26 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1096621..1107631
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAD59_RS05265 (QAD59_05270) | - | 1096808..1098130 (-) | 1323 | WP_286489556.1 | M23 family metallopeptidase | - |
| QAD59_RS05270 (QAD59_05275) | - | 1098140..1099084 (-) | 945 | WP_286489557.1 | outer membrane beta-barrel protein | - |
| QAD59_RS05275 (QAD59_05280) | - | 1099093..1099947 (-) | 855 | WP_286489558.1 | outer membrane beta-barrel protein | - |
| QAD59_RS05280 (QAD59_05285) | - | 1099937..1100659 (-) | 723 | WP_156608595.1 | hypothetical protein | - |
| QAD59_RS05285 (QAD59_05290) | panB | 1100808..1101620 (+) | 813 | WP_286489559.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| QAD59_RS05290 (QAD59_05295) | ruvB | 1101621..1102631 (+) | 1011 | WP_001928060.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| QAD59_RS05295 (QAD59_05300) | tatB | 1102698..1103174 (+) | 477 | WP_286489560.1 | Sec-independent protein translocase protein TatB | - |
| QAD59_RS05300 (QAD59_05305) | tatC | 1103167..1103928 (+) | 762 | WP_286489561.1 | twin-arginine translocase subunit TatC | - |
| QAD59_RS05305 (QAD59_05310) | queA | 1103929..1104966 (+) | 1038 | WP_286489562.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| QAD59_RS05310 (QAD59_05315) | rsmG | 1104963..1105499 (+) | 537 | WP_140445987.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| QAD59_RS05315 (QAD59_05320) | - | 1105493..1105735 (+) | 243 | WP_162972114.1 | PP0621 family protein | - |
| QAD59_RS05320 (QAD59_05325) | - | 1105738..1106145 (+) | 408 | WP_140445986.1 | hypothetical protein | - |
| QAD59_RS05330 (QAD59_05335) | - | 1106277..1106879 (-) | 603 | WP_120933236.1 | outer membrane protein | - |
| QAD59_RS05335 (QAD59_05340) | - | 1107170..1107544 (+) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37321.30 Da Isoelectric Point: 6.0715
>NTDB_id=744367 QAD59_RS05290 WP_001928060.1 1101621..1102631(+) (ruvB) [Helicobacter pylori strain BS26]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=744367 QAD59_RS05290 WP_001928060.1 1101621..1102631(+) (ruvB) [Helicobacter pylori strain BS26]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTAG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCTGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATTAAAAAAGCCGCCACTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGACTTTTAAAAAGGGTACGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTAG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCTGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATTAAAAAAGCCGCCACTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGACTTTTAAAAAGGGTACGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.917 |
100 |
0.979 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |