Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QAP01_RS05420 Genome accession   NZ_CP122950
Coordinates   1142088..1143098 (+) Length   336 a.a.
NCBI ID   WP_000664512.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS28-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1137088..1148098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP01_RS05395 (QAP01_05395) - 1137275..1138597 (-) 1323 WP_286497942.1 M23 family metallopeptidase -
  QAP01_RS05400 (QAP01_05400) - 1138607..1139551 (-) 945 WP_286497943.1 outer membrane beta-barrel protein -
  QAP01_RS05405 (QAP01_05405) - 1139560..1140414 (-) 855 WP_286498791.1 outer membrane beta-barrel protein -
  QAP01_RS05410 (QAP01_05410) - 1140404..1141126 (-) 723 WP_000523341.1 hypothetical protein -
  QAP01_RS05415 (QAP01_05415) panB 1141275..1142087 (+) 813 WP_286497944.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  QAP01_RS05420 (QAP01_05420) ruvB 1142088..1143098 (+) 1011 WP_000664512.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QAP01_RS05425 (QAP01_05425) tatB 1143166..1143648 (+) 483 WP_286497945.1 Sec-independent protein translocase protein TatB -
  QAP01_RS05430 (QAP01_05430) tatC 1143641..1144399 (+) 759 WP_286497946.1 twin-arginine translocase subunit TatC -
  QAP01_RS05435 (QAP01_05435) queA 1144403..1145440 (+) 1038 WP_286497947.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QAP01_RS05440 (QAP01_05440) rsmG 1145437..1145973 (+) 537 WP_050824041.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QAP01_RS05445 (QAP01_05445) - 1145967..1146197 (+) 231 WP_286497948.1 PP0621 family protein -
  QAP01_RS05450 (QAP01_05450) - 1146200..1146607 (+) 408 WP_286497949.1 hypothetical protein -
  QAP01_RS05460 (QAP01_05460) - 1146740..1147312 (-) 573 WP_227986160.1 outer membrane protein -
  QAP01_RS05465 (QAP01_05465) - 1147633..1148007 (+) 375 WP_000772148.1 chemotaxis response regulator CheY -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37345.36 Da        Isoelectric Point: 6.2626

>NTDB_id=744324 QAP01_RS05420 WP_000664512.1 1142088..1143098(+) (ruvB) [Helicobacter pylori strain BS28-1]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLHQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLDITLHALKELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=744324 QAP01_RS05420 WP_000664512.1 1142088..1143098(+) (ruvB) [Helicobacter pylori strain BS28-1]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCGATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGTCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATTAAAAAAGCCGCCGCCAAACTCCACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAGACATCACTTTGCATGCTTTGAAGGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGGCGACCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

96.726

100

0.967
  ruvB Bacillus subtilis subsp. subtilis str. 168

54.18

96.131

0.521
  ruvB Streptococcus pneumoniae TIGR4

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae R6

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae D39

50.774

96.131

0.488
  ruvB Synechocystis sp. PCC 6803

51.104

94.345

0.482