Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QAP00_RS05380 Genome accession   NZ_CP122949
Coordinates   1123149..1124159 (+) Length   336 a.a.
NCBI ID   WP_309256230.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1118149..1129159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP00_RS05355 (QAP00_05360) - 1118338..1119660 (-) 1323 WP_309256227.1 M23 family metallopeptidase -
  QAP00_RS05360 (QAP00_05365) - 1119670..1120608 (-) 939 WP_309256228.1 outer membrane protein -
  QAP00_RS05365 (QAP00_05370) - 1120617..1121471 (-) 855 WP_309256229.1 outer membrane beta-barrel protein -
  QAP00_RS05370 (QAP00_05375) - 1121461..1122183 (-) 723 WP_050835052.1 hypothetical protein -
  QAP00_RS05375 (QAP00_05380) panB 1122336..1123148 (+) 813 WP_140476659.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  QAP00_RS05380 (QAP00_05385) ruvB 1123149..1124159 (+) 1011 WP_309256230.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QAP00_RS05385 (QAP00_05390) tatB 1124227..1124709 (+) 483 WP_309256231.1 Sec-independent protein translocase protein TatB -
  QAP00_RS05390 (QAP00_05395) tatC 1124702..1125448 (+) 747 WP_309256232.1 twin-arginine translocase subunit TatC -
  QAP00_RS05395 (QAP00_05400) queA 1125452..1126489 (+) 1038 WP_309256233.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QAP00_RS05400 (QAP00_05405) rsmG 1126486..1127022 (+) 537 WP_050833281.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QAP00_RS05405 (QAP00_05410) - 1127016..1127246 (+) 231 WP_000944427.1 PP0621 family protein -
  QAP00_RS05410 (QAP00_05415) - 1127249..1127656 (+) 408 WP_140488031.1 hypothetical protein -
  QAP00_RS05420 (QAP00_05425) - 1127788..1128390 (-) 603 WP_000291635.1 outer membrane protein -
  QAP00_RS05425 (QAP00_05430) - 1128675..1129049 (+) 375 WP_000772153.1 chemotaxis response regulator CheY -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37341.34 Da        Isoelectric Point: 6.0704

>NTDB_id=744288 QAP00_RS05380 WP_309256230.1 1123149..1124159(+) (ruvB) [Helicobacter pylori strain BS22]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDECTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=744288 QAP00_RS05380 WP_309256230.1 1123149..1124159(+) (ruvB) [Helicobacter pylori strain BS22]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAACCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAGTTTCTATTTGTGCAGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGTTGG
ATATTATCATAGGCTCAGGTCCAGCGGCTCAAACCATTAAAATTGACTTGCCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACCGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATTAAAAAAGCCGCCACCAAACTCAATCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAGTTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCATCTATGAGGGAAGATGAATGCACGA
TTGAAGACGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.321

100

0.973
  ruvB Bacillus subtilis subsp. subtilis str. 168

54.18

96.131

0.521
  ruvB Streptococcus pneumoniae TIGR4

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae R6

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae D39

50.464

96.131

0.485
  ruvB Synechocystis sp. PCC 6803

50.789

94.345

0.479