Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | QAP02_RS05410 | Genome accession | NZ_CP122948 |
| Coordinates | 1129241..1130251 (+) | Length | 336 a.a. |
| NCBI ID | WP_097683481.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BS21 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1124241..1135251
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAP02_RS05385 (QAP02_05385) | - | 1124425..1125747 (-) | 1323 | WP_286463321.1 | M23 family metallopeptidase | - |
| QAP02_RS05390 (QAP02_05390) | - | 1125757..1126701 (-) | 945 | WP_286463323.1 | outer membrane beta-barrel protein | - |
| QAP02_RS05395 (QAP02_05395) | - | 1126710..1127567 (-) | 858 | WP_286463324.1 | outer membrane beta-barrel protein | - |
| QAP02_RS05400 (QAP02_05400) | - | 1127557..1128279 (-) | 723 | WP_286464802.1 | hypothetical protein | - |
| QAP02_RS05405 (QAP02_05405) | panB | 1128428..1129240 (+) | 813 | WP_286463326.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| QAP02_RS05410 (QAP02_05410) | ruvB | 1129241..1130251 (+) | 1011 | WP_097683481.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| QAP02_RS05415 (QAP02_05415) | tatB | 1130319..1130801 (+) | 483 | WP_286463331.1 | Sec-independent protein translocase protein TatB | - |
| QAP02_RS05420 (QAP02_05420) | tatC | 1130794..1131540 (+) | 747 | WP_120936260.1 | twin-arginine translocase subunit TatC | - |
| QAP02_RS05425 (QAP02_05425) | queA | 1131541..1132578 (+) | 1038 | WP_140528351.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| QAP02_RS05430 (QAP02_05430) | rsmG | 1132575..1133111 (+) | 537 | WP_140528350.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| QAP02_RS05435 (QAP02_05435) | - | 1133105..1133347 (+) | 243 | WP_000944403.1 | PP0621 family protein | - |
| QAP02_RS05440 (QAP02_05440) | - | 1133350..1133757 (+) | 408 | WP_286463338.1 | hypothetical protein | - |
| QAP02_RS05450 (QAP02_05450) | - | 1133902..1134474 (-) | 573 | WP_238701912.1 | outer membrane protein | - |
| QAP02_RS05455 (QAP02_05455) | - | 1134795..1135169 (+) | 375 | WP_000772151.1 | chemotaxis response regulator CheY | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37319.36 Da Isoelectric Point: 6.0715
>NTDB_id=744243 QAP02_RS05410 WP_097683481.1 1129241..1130251(+) (ruvB) [Helicobacter pylori strain BS21]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THVLLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THVLLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=744243 QAP02_RS05410 WP_097683481.1 1129241..1130251(+) (ruvB) [Helicobacter pylori strain BS21]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGTCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAGATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTTTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTCATCATCAAAAAAGCCGCCGTTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GCAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAACTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGTGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGTCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAGATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTTTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTCATCATCAAAAAAGCCGCCGTTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GCAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAACTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGTGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
98.512 |
100 |
0.985 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Synechocystis sp. PCC 6803 |
51.582 |
94.048 |
0.485 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.625 |
95.238 |
0.482 |
| ruvB | Streptococcus pneumoniae R6 |
50.625 |
95.238 |
0.482 |
| ruvB | Streptococcus pneumoniae D39 |
50.625 |
95.238 |
0.482 |