NTDB

Overview

Name	ruvB	Type	Machinery gene
Locus tag	QAD57_RS07440	Genome accession	NZ_CP122947
Coordinates	1564894..1565904 (-)	Length	336 a.a.
NCBI ID	WP_050833277.1	Uniprot ID	-
Organism	Helicobacter pylori strain BS07
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1559894..1570904

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAD57_RS07395 (QAD57_07390)	-	1559986..1560360 (-)	375	WP_180462265.1	chemotaxis response regulator CheY	-
QAD57_RS07400 (QAD57_07395)	-	1560651..1561253 (+)	603	WP_000291636.1	outer membrane protein	-
QAD57_RS07410 (QAD57_07405)	-	1561385..1561792 (-)	408	WP_286445788.1	hypothetical protein	-
QAD57_RS07415 (QAD57_07410)	-	1561795..1562037 (-)	243	WP_000944434.1	PP0621 family protein	-
QAD57_RS07420 (QAD57_07415)	rsmG	1562031..1562567 (-)	537	WP_286445789.1	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	-
QAD57_RS07425 (QAD57_07420)	queA	1562564..1563601 (-)	1038	WP_286445790.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
QAD57_RS07430 (QAD57_07425)	tatC	1563602..1564351 (-)	750	WP_286445791.1	twin-arginine translocase subunit TatC	-
QAD57_RS07435 (QAD57_07430)	tatB	1564344..1564826 (-)	483	WP_187852314.1	Sec-independent protein translocase protein TatB	-
QAD57_RS07440 (QAD57_07435)	ruvB	1564894..1565904 (-)	1011	WP_050833277.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
QAD57_RS07445 (QAD57_07440)	panB	1565905..1566717 (-)	813	WP_180451696.1	3-methyl-2-oxobutanoate hydroxymethyltransferase	-
QAD57_RS07450 (QAD57_07445)	-	1566867..1567589 (+)	723	WP_000523341.1	hypothetical protein	-
QAD57_RS07455 (QAD57_07450)	-	1567579..1568433 (+)	855	WP_286445792.1	outer membrane beta-barrel protein	-
QAD57_RS07460 (QAD57_07455)	-	1568442..1569380 (+)	939	WP_286445793.1	outer membrane beta-barrel protein	-
QAD57_RS07465 (QAD57_07460)	-	1569390..1570712 (+)	1323	WP_286445794.1	M23 family metallopeptidase	-

Sequence

Protein

Download Length: 336 a.a. Molecular weight: 37335.32 Da Isoelectric Point: 6.0715

                                >NTDB_id=744221 QAD57_RS07440 WP_050833277.1 1564894..1565904(-) (ruvB) [Helicobacter pylori strain BS07]

MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN

IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT

RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM

DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK

THVLLKIPTLNPQTLF

Nucleotide

Download Length: 1011 bp

                                >NTDB_id=744221 QAD57_RS07440 WP_050833277.1 1564894..1565904(-) (ruvB) [Helicobacter pylori strain BS07]

ATGAAAGAACGGATAGTTAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA

AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG

ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT

ATCAAAATCACTGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT

TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAAGTTTTATACCCGGCTATGGAAGATTTCAGACTGG

ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACC

AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT

AGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAACCAAGATATCAAAGAAGAAAGTGCTGATGAAATCGCTAAAAGGA

GTAGAGGCACGCCAAGGATTGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG

GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCAGATTTGGCGTATTT

GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA

TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA

ACCCACGTGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvB	Helicobacter pylori 26695	97.619	100	0.976
ruvB	Bacillus subtilis subsp. subtilis str. 168	53.87	96.131	0.518
ruvB	Synechocystis sp. PCC 6803	51.899	94.048	0.488
ruvB	Streptococcus pneumoniae TIGR4	50.938	95.238	0.485
ruvB	Streptococcus pneumoniae R6	50.938	95.238	0.485
ruvB	Streptococcus pneumoniae D39	50.938	95.238	0.485

Detailed information NTG0744221